Job Description P21888 Confidence 100.00% Date Thu Jan 5 11:38:38 GMT 2012 Rank 35 Aligned Residues 385 % Identity 17% Template c2cfoA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase; PDBTitle: non-discriminating glutamyl-trna synthetase from2 thermosynechococcus elongatus in complex with glu Resolution 2.45 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D	F	D	A	L	N	I	L	R
Query Conservation
Alig confidence																												.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	P	S	P	T	G	N	L	H	I	G	T	A	R	T	A	V	F	N	W	L	Y	A	R	H	.	.	.	.	.	R	G	G	K	F	I	L	R	I	E	D	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	R	S	R	P	E	Y	T	E	N	I	L	E	G	L	Q	W	L	G	L	T	W
Template Known Secondary structure						T	T	S			B																	.	.	.	.	.	T	T											S	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S																T	T
Template Predicted Secondary structure																												.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.	.	.														.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.																		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.
Template Sequence		D	E	G	P	Y	F	Q	S	D	R	L	D	L	Y	R	Q	A	I	Q	T	L	L	D	K	G	L	A	Y	Y	C	.	.	.	.	.	Y	C	T	P	E	E	L	E	A	L	R	A	E	Q	K	A	K	G	Q	A	P	R	Y	D	N	R	H	R	H	L	T	P	E	E	Q	A	A	F	E	A	A	G	R	T	P
Template Known Secondary structure		S						G	G	G															T	T	S					.	.	.	.	.																		T			S	S				T	T	T	T												T	T
Template Predicted Secondary structure																																.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.						.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																	.	.	.	.	.																																.	.	.
Query SS confidence																																	.	.	.	.	.																																.	.	.
Query Sequence		V	V	D	D	K	R	N	P	M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	.	.	.	.	.	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	.	.	.	P	H	H	E	N	E	I	A	Q	S
Query Conservation																																	.	.	.	.	.																																.	.	.
Alig confidence																																	.	.	.	.	.									.																							.	.	.
Template Conservation																																														.
Template Sequence		V	I	R	F	K	I	E	D	D	R	Q	I	E	W	Q	D	L	V	R	G	R	V	S	W	Q	G	A	D	L	G	G	D	M	V	I	A	R	A	A	P	R	G	E	I	.	G	Y	P	L	Y	N	L	V	V	V	V	D	D	I	A	M	G	I	T	D	V	I	R	G	E	D	H	I	G	N	T	P	K	Q	I
Template Known Secondary structure									T	T								T	T	T							G	G	G	G		S	S						S			T	T	S		.			B													T	T		S						G	G	G	T	T
Template Predicted Secondary structure																																														.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		243			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.					.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure			.	.																																																												.	.	.	.														.
Query SS confidence			.	.																																																												.	.	.	.														.
Query Sequence		T	.	.	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S	G	M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	H	Y	R	S	Q	L	.	.	.	.	N	Y	S	E	E	N	L	K	Q	A	R	A	A	.
Query Conservation			.	.																																																												.	.	.	.														.
Alig confidence			.	.																																																												.	.	.	.														.
Template Conservation
Template Sequence		L	L	Y	E	A	L	G	A	T	P	P	N	F	A	H	T	P	L	I	L	N	S	T	G	Q	K	L	S	K	R	D	G	V	T	S	I	S	D	F	R	A	M	G	Y	L	A	P	A	L	A	N	Y	M	T	L	L	G	W	S	P	P	E	G	V	G	E	L	F	T	L	D	L	A	A	K	H	F	S	F	E
Template Known Secondary structure							T	T															S	S	S	S	B			T	T	S	S			B							T	T													T	T	B				T	T	T		S													S	T
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
												316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	L	E	R	L	Y	T	A	L	R	G	T	D	K	T	V	A	P	A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E	D	M	A	A	A	N	A	M	A	S	H	L	R
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																																						.
Template Conservation																																																																																	.
Template Sequence		R	I	N	K	A	G	A	R	F	D	W	D	K	L	N	W	L	N	R	Q	Y	I	Q	Q	L	E	P	E	E	F	L	A	E	L	I	P	L	W	Q	G	A	G	Y	A	F	D	E	E	R	D	R	P	W	L	F	D	L	A	Q	L	L	Q	P	G	L	N	T	L	R	E	A	I	D	Q	G	A	V	F	F	.
Template Known Secondary structure		T	B		S	S																		T	T	S																	T					T	T	T	T												G	G	G		S	S	G	G	G										.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.				.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence		K	L	S	A	V	L	G	L	L	E	Q	E	P	E	A	F	L	Q	S	G	A	Q	A	D	D	S	E	V	A	E	I	E	A	L	I	Q	Q	R	L	D	A	R	K	A	K	D	W	.	.	.	A	A	A	D	A	A	R	D	R	L	N	E	M	G	I	V
Query Conservation																																																	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	I	P	S	V	T	F	D	S	E	A	M	A	Q	L	G	Q	P	Q	S	A	T	I	L	A	Y	L	L	E	H	L	P	A	E	P	A	L	T	V	A	M	G	Q	Q	L	I	Q	Q	A	A	K	A	A	G	V	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	S	S	S												T	S	T	T														S	S	S																			T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.