Job Description P21888 Confidence 38.03% Date Thu Jan 5 11:38:38 GMT 2012 Rank 113 Aligned Residues 71 % Identity 23% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		I	F	N	T	L	T	R	Q	K	E	E	F	K	P	I	H	A	G	E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	.	.	.	.	.	D	K	I	I	K	R	A
Query Conservation																																																																						.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.												.															.	.						.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.												.															.	.
Template Sequence		L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	.	.	.	.	.	.	.	G	S	G	K	T	T	T	A	G	K	L	.	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	.	.	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G
Template Known Secondary structure						T	T		S						S		S	S	S	S								S	S	.	.	.	.	.	.	.	S	S	S	S	T	T	T					.						T	T	S					B		.	.					S	S	S		S
Template Predicted Secondary structure																														.	.	.	.	.	.	.												.															.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.								.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		79	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	N	G	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Q	I	G	V	Q
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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