Job Description P21888 Confidence 100.00% Date Thu Jan 5 11:38:38 GMT 2012 Rank 30 Aligned Residues 393 % Identity 15% Template c1g59A_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna synthetase; PDBTitle: glutamyl-trna synthetase complexed with trna(glu). Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D	F	D	A	L	N	I	L	R
Query Conservation
Alig confidence																											.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	P	S	P	T	G	D	P	H	V	G	T	A	Y	I	A	L	F	N	Y	A	W	A	R	.	.	.	.	.	R	N	G	G	R	F	I	V	R	I	E	D	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	R	Y	V	P	G	A	E	E	R	I	L	A	A	L	K	W	L	G	L	S	Y
Template Known Secondary structure							S	S	S		B																.	.	.	.	.		T	T							B					.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T			T	T												T	T
Template Predicted Secondary structure																											.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.														.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		108	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Query Sequence		P	D	M	E	P	.	.	.	.	.	.	.	.	.	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	.	.	.	.	.	.	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V
Query Conservation							.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Alig confidence		.					.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	D	E	G	P	D	V	A	A	P	T	G	P	Y	R	Q	S	E	R	L	P	L	Y	Q	K	Y	A	E	E	L	L	K	R	G	W	A	Y	R	A	F	E	T	P	E	E	L	E	Q	I	R	K	E	K	G	G	Y	D	G	R	A	R	N	I	P	P	E	E	A	E	E	R	A	R	R	G	E	P	H	V	I
Template Known Secondary structure		.	S	B		S	S	S			S	S	S		S	B	G	G	G	G													T	T	T	S																		S	S	S				G	G	G	G	S											T	T
Template Predicted Secondary structure		.
Template SS confidence
			68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.									.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.																																														.
Query SS confidence																												.	.	.	.	.	.	.	.																																														.
Query Sequence		D	D	K	R	N	P	M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	.	.	.	.	.	.	.	.	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	.
Query Conservation																												.	.	.	.	.	.	.	.																																														.
Alig confidence																												.	.	.	.	.	.	.	.																.					.	.										.	.	.	.											.
Template Conservation																																																			.					.	.										.	.	.	.
Template Sequence		R	L	K	V	P	R	P	G	T	T	E	V	K	D	E	L	R	G	V	V	V	Y	D	N	Q	E	I	P	D	V	V	L	L	K	S	D	G	Y	P	T	Y	H	L	A	N	V	V	D	D	.	H	L	M	G	.	.	V	T	D	V	I	R	A	E	E	.	.	.	.	W	L	V	S	T	P	I	H	V	L	L
Template Known Secondary structure							S	S								T	T	T							G	G	G	S								T	T	S		B											.			T	T	.	.								G	G	.	.	.	.	G	T	T	T
Template Predicted Secondary structure																																																			.					.	.										.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.			200	.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.
			244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S	G	M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A	L	E	R	L	Y	T	A
Query Conservation		.
Alig confidence		.																																																																											.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		Y	R	A	F	G	W	E	A	P	R	F	Y	H	M	P	L	L	R	N	P	D	K	T	K	I	S	K	R	K	S	H	T	S	L	D	W	Y	K	A	E	G	F	L	P	E	A	L	R	N	Y	L	C	L	M	G	F	S	M	P	D	G	R	E	I	F	T	L	E	E	F	I	Q	A	F	T	.	.	.	.	.
Template Known Secondary structure					T	T													B		T	T	S	S	B			T	T	T	S			B							T	T													T	T	B			T	T																.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		L	R	G	T	D	K	T	V	A	P	A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E	D	M	A	A	A	N	A	M	A	S	H	.	.	.	L	R	K	L	S	A	V	L	G	L	L	E	Q	E	P	E
Query Conservation																																																															.	.	.
Alig confidence																																																															.	.	.
Template Conservation
Template Sequence		W	E	R	V	S	L	G	G	P	V	F	D	L	E	K	L	R	W	M	N	G	K	Y	I	R	E	V	L	S	L	E	E	V	A	E	R	V	K	P	F	L	R	E	A	G	L	S	W	E	S	E	A	Y	L	R	R	A	V	E	L	M	R	P	R	F	D	T	L	K	E	F	P	E	K	A	R	Y	L	F	T
Template Known Secondary structure		G	G	G	B			S			B																	T	S																T	T				S													G	G	G		S	S	T	T						S	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.				.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		A	F	L	Q	S	G	A	Q	A	D	D	S	E	V	A	E	I	E	A	L	I	Q	Q	R	L	D	A	R	K	A	K	D	W	A	A	A	D	.	.	.	A	A	R	D	R	L	N	E	M	G	I	V	L	E	D
Query Conservation																																							.	.	.
Alig confidence																																							.	.	.
Template Conservation
Template Sequence		E	D	Y	P	V	S	E	K	A	Q	R	K	L	E	E	G	L	P	L	L	K	E	L	Y	P	R	L	R	A	Q	E	E	W	T	E	A	A	L	E	A	L	L	R	G	F	A	A	E	K	G	V	K	L	G	Q
Template Known Secondary structure		S																					T	T								S																		T	T			T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.