Job Description P05055 Confidence 30.22% Date Thu Jan 5 10:58:40 GMT 2012 Rank 205 Aligned Residues 52 % Identity 23% Template c3trzE_ PDB info PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element Resolution 2.90 Å

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		626	.	.	.	630	.	.	.	.				.	.	.	.	.	640								.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
Predicted Secondary structure											.	.	.							.	.	.	.	.	.	.
Query SS confidence											.	.	.							.	.	.	.	.	.	.
Query Sequence		T	G	K	V	T	R	I	V	D	.	.	.	F	G	A	F	V	A	.	.	.	.	.	.	.	I	G	G	G	K	E	G	L	V	H	I	S	Q	I	A	D	K	R	V	E	K	V	T	D	Y	L	Q	M	G	Q	E	V	P	V	K	V	L	E	V	D	R
Query Conservation											.	.	.							.	.	.	.	.	.	.
Alig confidence											.	.	.							.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		A	G	I	C	K	W	F	N	V	R	M	G	F	G	F	L	S	M	T	A	R	A	G	V	A	L	D	P	P	V	D	V	F	V	H	Q	S	K	L	H	M	E	G	F	R	S	.	.	.	.	L	K	E	G	E	A	V	E	F	T	F	K	K	S	A	K
Template Known Secondary structure										T	T	T	T										T	T													G	G	G	B			S	S	S			.	.	.	.			T	T											T	T
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions