Job Description P05055 Confidence 100.00% Date Thu Jan 5 10:58:40 GMT 2012 Rank 3 Aligned Residues 442 % Identity 100% Template c3cdjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polynucleotide phosphorylase; PDBTitle: crystal structure of the e. coli kh/s1 domain truncated2 pnpase Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	N	P	I	V	R	K	F	Q	Y	G	Q	H	T	V	T	L	E	T	G	M	M	A	R	Q	A	T	A	A	V	M	V	S	M	D	D	T	A	V	F	V	T	V	V	G	Q	K	K	A	K	P	G	Q	D	F	F	P	L	T	V	N	Y	Q	E	R	T	Y	A	A	G	R	I	P	G	S	F	F	R	R
Query Conservation
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		L	L	N	P	I	V	R	K	F	Q	Y	G	Q	H	T	V	T	L	E	T	G	M	M	A	R	Q	A	T	A	A	V	M	V	S	M	D	D	T	A	V	F	V	T	V	V	G	Q	K	K	A	K	P	G	Q	D	F	F	P	L	T	V	N	Y	Q	E	R	T	Y	A	A	G	R	I	.	.	.	.	.	.	.
Template Known Secondary structure													T	T								S	S	S		T	T	S	S								T	T											S	S			S			S	S											T	G	G	G	T			.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	R	P	S	E	G	E	T	L	I	A	R	L	I	D	R	P	I	R	P	L	F	P	E	G	F	V	N	E	V	Q	V	I	A	T	V	V	S	V	N	P	Q	V	N	P	D	I	V	A	M	I	G	A	S	A	A	L	S	L	S	G	I	P	F	N	G	P	I	G	A	A	R	V	G	Y	I	N	D	Q
Query Conservation
Alig confidence		.	.	.																							.
Template Conservation		.	.	.																							.
Template Sequence		.	.	.	P	S	E	G	E	T	L	I	A	R	L	I	D	R	P	I	R	P	L	F	P	E	.	F	V	N	E	V	Q	V	I	A	T	V	V	S	V	N	P	Q	V	N	P	D	I	V	A	M	I	G	A	S	A	A	L	S	L	S	G	I	P	F	N	G	P	I	G	A	A	R	V	G	Y	I	N	D	Q
Template Known Secondary structure		.	.	.			T	T													G	G	G	S			.			S												B	T	T	B																	S		S	S			S											T	T
Template Predicted Secondary structure		.	.	.																							.
Template SS confidence
					97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	L	N	P	T	Q	D	E	L	K	E	S	K	L	D	L	V	V	A	G	T	E	A	A	V	L	M	V	E	S	E	A	Q	L	L	S	E	D	Q	M	L	G	A	V	V	F	G	H	E	Q	Q	Q	V	V	I	Q	N	I	N	E	L	V	K	E	A	G	K	P	R	W	D	W	Q	P	E	P	V	N	E
Query Conservation
Alig confidence																																																																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		Y	V	L	N	P	T	Q	D	E	L	K	E	S	K	L	D	L	V	V	A	G	T	E	A	A	V	L	M	V	E	S	E	A	Q	L	L	S	E	D	Q	M	L	G	A	V	V	F	G	H	E	Q	Q	Q	V	V	I	Q	N	I	N	E	L	V	K	E	A	G	K	P	R	W	D	W	Q	P	E	P	.	.	.
Template Known Secondary structure					S			T	T	T	T	T	S		S									S	S														T	T																																							.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	N	A	R	V	A	A	L	A	E	A	R	L	S	D	A	Y	R	I	T	D	K	Q	E	R	Y	A	Q	V	D	V	I	K	S	E	T	I	A	T	L	L	A	E	D	E	T	L	D	E	N	E	L	G	E	I	L	H	A	I	E	K	N	V	V	R	S	R	V	L	A	G	E	P	R	I	D	G	R	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	E	K	N	V	V	R	S	R	V	L	A	G	E	P	R	I	D	G	R	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	T	T	T	S		S	S	S			T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																												322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	M	I	R	G	L	D	V	R	T	G	V	L	P	R	T	H	G	S	A	L	F	T	R	G	E	T	Q	A	L	V	T	A	T	L	G	T	A	R	D	A	Q	V	L	D	E	L	M	G	E	R	T	D	T	F	L	F	H	Y	N	F	P	P	Y	S	V	G	E	T	G	M	V	G	S	P	K	R	R	E
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	M	I	R	G	L	D	V	R	T	G	V	L	P	R	T	H	G	S	A	L	F	T	R	G	E	T	Q	A	L	V	T	A	T	L	G	T	.	.	.	.	.	.	.	.	.	.	.	.	E	R	T	D	T	F	L	F	H	Y	N	F	P	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E
Template Known Secondary structure		S	S										S		S	S	S	S	S								T	T												.	.	.	.	.	.	.	.	.	.	.	.					S											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.													.	.	.	.	.	.	.	.	390	.	.	.	.	.	.															.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	H	G	R	L	A	K	R	G	V	L	A	V	M	P	D	M	D	K	F	P	Y	T	V	R	V	V	S	E	I	T	E	S	N	G	S	S	S	M	A	S	V	C	G	A	S	L	A	L	M	D	A	G	V	P	I	K	A	A	V	A	G	I	A	M	G	L	V	K	E	G	D	N	Y	V	V	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	H	G	R	L	A	K	R	G	V	L	A	V	M	P	D	M	D	K	F	P	Y	T	V	R	V	V	S	E	I	T	E	S	N	G	S	S	S	M	A	S	V	C	G	A	S	L	A	L	M	D	A	G	V	P	I	K	A	A	V	A	G	I	A	M	G	L	V	K	E	G	D	N	Y	V	V	L	S	D
Template Known Secondary structure				T	T									T	T	S			S	S	S	S															S				S													T	T				S	S													T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	G	D	E	D	H	L	G	D	M	D	F	K	V	A	G	S	R	D	G	I	S	A	L	Q	M	D	I	K	I	E	G	I	T	K	E	I	M	Q	V	A	L	N	Q	A	K	G	A	R	L	H	I	L	G	V	M	E	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	G	D	E	D	H	L	G	D	M	D	F	K	V	A	G	S	R	D	G	I	S	A	L	Q	M	D	I	K	I	E	G	I	T	K	E	I	M	Q	V	A	L	N	Q	A	K	G	A	R	L	H	I	L	G	V	M	E	Q	A
Template Known Secondary structure				G	G	G	S	S	S	S	S									S	S											S	S				S	S																					T	T
Template Predicted Secondary structure
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.