Job Description P05055 Confidence 100.00% Date Thu Jan 5 10:58:40 GMT 2012 Rank 2 Aligned Residues 516 % Identity 100% Template c3cdiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polynucleotide phosphorylase; PDBTitle: crystal structure of e. coli pnpase Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	P	I	V	R	K	F	Q	Y	G	Q	H	T	V	T	L	E	T	G	M	M	A	R	Q	A	T	A	A	V	M	V	S	M	D	D	T	A	V	F	V	T	V	V	G	Q	K	K	A	K	P	G	Q	D	F	F	P	L	T	V	N	Y	Q	E	R	T	Y	A	A	G	R	I	P	G	S	F	F	R	R	E
Query Conservation
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		L	N	P	I	V	R	K	F	Q	Y	G	Q	H	T	V	T	L	E	T	G	M	M	A	R	Q	A	T	A	A	V	M	V	S	M	D	D	T	A	V	F	V	T	V	V	G	Q	K	K	A	K	P	G	Q	D	F	F	P	L	T	V	N	Y	Q	E	R	T	Y	A	A	G	R	I	P	.	.	.	.	.	.	.
Template Known Secondary structure												T	T								S	S	S		T	T	S	S								T	T											S	S			S	S			S											G	G	G	G	T				.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	P	S	E	G	E	T	L	I	A	R	L	I	D	R	P	I	R	P	L	F	P	E	G	F	V	N	E	V	Q	V	I	A	T	V	V	S	V	N	P	Q	V	N	P	D	I	V	A	M	I	G	A	S	A	A	L	S	L	S	G	I	P	F	N	G	P	I	G	A	A	R	V	G	Y	I	N	D	Q	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	P	S	E	G	E	T	L	I	A	R	L	I	D	R	P	I	R	P	L	F	P	E	G	F	V	N	E	V	Q	V	I	A	T	V	V	S	V	N	P	Q	V	N	P	D	I	V	A	M	I	G	A	S	A	A	L	S	L	S	G	I	P	F	N	G	P	I	G	A	A	R	V	G	Y	I	N	D	Q	Y
Template Known Secondary structure																				G	G	G	S		T	T			S													T	T	S																		T	S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	N	P	T	Q	D	E	L	K	E	S	K	L	D	L	V	V	A	G	T	E	A	A	V	L	M	V	E	S	E	A	Q	L	L	S	E	D	Q	M	L	G	A	V	V	F	G	H	E	Q	Q	Q	V	V	I	Q	N	I	N	E	L	V	K	E	A	G	K	P	R	W	D	W	Q	P	E	P	V	N	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	N	P	T	Q	D	E	L	K	E	S	K	L	D	L	V	V	A	G	T	E	A	A	V	L	M	V	E	S	E	A	Q	L	L	S	E	D	Q	M	L	G	A	V	V	F	G	H	E	Q	Q	Q	V	V	I	Q	N	I	N	E	L	V	K	E	A	G	K	P	R	W	D	W	Q	P	E	P	V	N	E	A
Template Known Secondary structure				S			T	T	G	G	G	G		S									S	S																												T														T														T	T
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	A	R	V	A	A	L	A	E	A	R	L	S	D	A	Y	R	I	T	D	K	Q	E	R	Y	A	Q	V	D	V	I	K	S	E	T	I	A	T	L	L	A	E	D	E	T	L	D	E	N	E	L	G	E	I	L	H	A	I	E	K	N	V	V	R	S	R	V	L	A	G	E	P	R	I	D	G	R	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	A	R	V	A	A	L	A	E	A	R	L	S	D	A	Y	R	I	T	D	K	Q	E	R	Y	A	Q	V	D	V	I	K	S	E	T	I	A	T	L	L	A	E	D	E	T	L	D	E	N	E	L	G	E	I	L	H	A	I	E	K	N	V	V	R	S	R	V	L	A	G	E	P	R	I	D	G	R	E	K
Template Known Secondary structure		G	G	G	S	S	T	T	T	T								T	T																										S																										T	T				T	T	S			T
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	I	R	G	L	D	V	R	T	G	V	L	P	R	T	H	G	S	A	L	F	T	R	G	E	T	Q	A	L	V	T	A	T	L	G	T	A	R	D	A	Q	V	L	D	E	L	M	G	E	R	T	D	T	F	L	F	H	Y	N	F	P	P	Y	S	V	G	E	T	G	M	V	G	S	P	K	R	R	E	I
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Sequence		D	M	I	R	G	L	D	V	R	T	G	V	L	P	R	T	H	G	S	A	L	F	T	R	G	E	T	Q	A	L	V	T	A	T	L	G	T	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	F	L	F	H	Y	N	F	P	P	Y	S	V	G	E	T	G	M	.	.	.	.	.	V	R	E	I
Template Known Secondary structure		T										S		S	T	T	S	S								T	T													T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S									G	G	G	G	T					.	.	.	.	.			T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.														.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.						.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	G	R	L	A	K	R	G	V	L	A	V	M	P	D	M	D	K	F	P	Y	T	V	R	V	V	S	E	I	T	E	S	N	G	S	S	S	M	A	S	V	C	G	A	S	L	A	L	M	D	A	G	V	P	I	K	A	A	V	A	G	I	A	M	G	L	V	K	E	G	D	N	Y	V	V	L	S	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	H	G	R	L	A	K	R	G	V	L	A	V	M	P	D	M	D	K	F	P	Y	T	V	R	V	V	S	E	I	T	E	S	N	G	S	S	S	M	A	S	V	C	G	A	S	L	A	L	M	D	A	G	V	P	I	K	A	A	V	A	G	I	A	M	G	L	V	K	E	G	D	N	Y	V	V	L	S	D	I
Template Known Secondary structure													T	T	S			S	S	S	S		S												S	S																	T	T				S	S													T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	D	E	D	H	L	G	D	M	D	F	K	V	A	G	S	R	D	G	I	S	A	L	Q	M	D	I	K	I	E	G	I	T	K	E	I	M	Q	V	A	L	N	Q	A	K	G	A	R	L	H	I	L	G	V	M	E	Q	A	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	D	E	D	H	L	G	D	M	D	F	K	V	A	G	S	R	D	G	I	S	A	L	Q	M	D	I	K	I	E	G	I	T	K	E	I	M	Q	V	A	L	N	Q	A	K	G	A	R	L	H	I	L	G	V	M	E	Q	A	I	N
Template Known Secondary structure			G	G	G	G	G	G		S									S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.