 |
Job Description | P05055 | Confidence | 96.68% | Date | Thu Jan 5 10:58:40 GMT 2012 |
Rank | 150 | Aligned Residues | 78 |
% Identity | 18% | Template | c2vnuD_ |
PDB info |
PDB header:hydrolase/rna | Chain: D: PDB Molecule:exosome complex exonuclease rrp44; |
PDBTitle: crystal structure of sc rrp44
|
Resolution | 2.30 Å |
|
 |
  |   |
602 | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | |
. | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 660 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
| . |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
G | E | K | A | K | H | A | I | R | R | I | E | E | I | T | A | E | I | E | V | G | R | V | Y | T | G | K | V | T | R | I | V | D | F | G | A | F | V | A | I | G | . |
G | G | K | E | G | L | V | H | I | S | Q | I | A | D | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | V | E | K | V | T |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |
|   |   |
|   |   |
|
|
|
|
|
|   |   | . |
|
|   |   |
|
|
|
|
|
|
|
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   | . |   |   |
|   |
|   |   |
|   |   |   |
|   |   |
|   |
|   |   |   |   |   |
|
|   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
Q | F | A | G | R | A | S | I | E | Y | Y | V | G | Q | V | X | R | N | N | E | S | T | . |
E | T | G | Y | V | I | K | V | F | N | N | G | I | V | V | L | V | P | K | F | G | V | E | G | L | I | R | L | D | N | L | T | E | D | P | N | S | A | A | F | D | E | V | E | Y | K | L | T | F | V | P | T | N | S | D | K | P |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| S |  | . |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |  |  |  |
| S |
| G | G | G |
|  |  |  | T | T | T | T |  |  |  |  |
|
| T | T |
| S | S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
892 | . | . | . | . | . | . | . | 900 | . | . | . | . | . | . | . | . | . | 910 | . | . | . | |
. | . | . | . | . | . | 920 | . | . | . | . | . | . | . | . | . | 930 | . | . | . | . | . | . | . | . | . | 940 | . | . | . | . | . | . | . | . | . | 950 | . | . | . | . | . | . | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 |
  |
  |   |
664 | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | Y | L | Q | M | G | Q | E | V | P | V | K | V | L | E | V | D |
Query Conservation |   |
|   |   |   |   |
|
|   |
|   |
|   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|
|   |
|   |
|   |
|   |   |
|   |
Template Sequence |   |
R | D | V | Y | V | F | D | K | V | E | V | Q | V | R | K | R | K |
Template Known Secondary structure |   |
 |  |  |  | T | T |
|  |  |  |  |  |  |
|
|
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
971 | . | . | . | . | . | . | . | . | 980 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|