Job Description P05055 Confidence 100.00% Date Thu Jan 5 10:58:40 GMT 2012 Rank 20 Aligned Residues 237 % Identity 17% Template c2nn6E_ PDB info PDB header:hydrolase/transferase Chain: E: PDB Molecule:exosome complex exonuclease rrp42; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 Resolution 3.35 Å

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		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	N	V	V	R	S	R	V	L	A	G	E	P	R	I	D	G	R	E	K	D	M	I	R	G	L	D	V	R	T	G	V	L	P	R	T	H	G	S	A	L	F	T	R	G	E	T	Q	A	L	V	T	A	T	L	G	T	A	R	D	A	Q	V	L	D	E	L	M	G	E	R	T	D	T	F	L	F	H	Y
Query Conservation
Alig confidence										.																																														.				.	.	.	.
Template Conservation										.																																														.				.	.	.	.
Template Sequence		E	K	V	Y	I	V	H	G	.	V	Q	E	D	L	R	V	D	G	R	G	C	E	D	Y	R	C	V	E	V	E	T	D	V	V	S	N	T	S	G	S	A	R	V	K	L	G	H	T	D	I	L	V	G	V	.	K	A	E	.	.	.	.	M	G	T	P	K	L	E	K	P	N	E	G	Y	L	E	F	F	V
Template Known Secondary structure										.			T	T			S	S	S			S	S													T	T	S	S	S							T	T								.				.	.	.	.		S				S	S	S		S	S
Template Predicted Secondary structure										.																																														.				.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.									.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.
Query Sequence		N	F	P	P	Y	S	V	G	E	T	G	M	V	G	S	P	K	R	R	E	I	G	H	G	R	L	A	K	R	G	V	L	A	V	.	.	.	.	.	.	.	.	M	P	D	M	D	K	F	P	Y	T	V	R	V	V	S	E	I	T	E	S	N	G	S	S	S	M	A	S	V	C	G	A	S	L	A	L	M	D
Query Conservation																																				.	.	.	.	.	.	.	.
Alig confidence																.																				.	.	.	.	.	.	.	.
Template Conservation																.
Template Sequence		D	C	S	A	S	A	T	P	E	F	E	G	R	G	.	G	D	D	L	G	T	E	I	A	N	T	L	Y	R	I	F	N	N	K	S	S	V	D	L	K	T	L	C	I	S	P	R	E	H	C	W	V	L	Y	V	D	V	L	L	L	E	C	G	G	N	L	F	D	A	I	S	I	A	V	K	A	A	L	F	N
Template Known Secondary structure					T	T	T		S	S			T	T	S	.	T																		S			S		S	S	S	S		S	S	T	T	T																S	S												T	T	T	T
Template Predicted Secondary structure																.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.																		.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.		.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query Sequence		A	G	V	P	I	K	A	A	V	A	G	I	A	M	G	L	V	K	E	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	V	V	L	S	D	I	L	G	D	E	D	H	L	G	D	M	D	F	K	V	A	G	S	R	D	G	.	I	S	A	L	Q	M	D	I	K	I	E	G	I
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.										.
Template Conservation																																																																														.
Template Sequence		T	R	I	P	R	V	R	V	L	E	D	I	E	L	S	D	D	P	Y	D	C	I	R	L	S	V	E	N	V	P	C	I	V	T	L	C	K	I	G	Y	R	H	V	V	D	A	T	L	Q	E	E	A	C	S	L	A	S	L	L	V	S	V	T	S	K	G	V	V	T	C	M	R	K	V	G	K	.	G	S	L
Template Known Secondary structure																		S	S				S					T	T										S	S	S	S			S	S							T	S		S									S	S	S				S						S	.	S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	E	I	M	Q	V	A	L	N	Q	A	K	G	A	R	L	H	I	L	G	V	M	E	Q	A	I	N	A	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	E	S	I	F	E	M	M	E	T	G	K	R	V	G	K	V	L	H	A	S	L	Q	S	V	V	H	K	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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