Job Description P05055 Confidence 100.00% Date Thu Jan 5 10:58:40 GMT 2012 Rank 22 Aligned Residues 195 % Identity 24% Template c2nn6D_ PDB info PDB header:hydrolase/transferase Chain: D: PDB Molecule:exosome complex exonuclease rrp46; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 Resolution 3.35 Å

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		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	R	G	L	D	V	R	T	G	V	L	P	R	T	H	G	S	A	L	F	T	R	G	E	T	Q	A	L	V	T	A	T	L	G	T	A	R	D	A	Q	V	L	D	E	L	M	G	E	R	T	D	T	F	L	F	H	Y	N	F	P	P	Y	S	V	G	E	T	G	M	V	G	S	P	K	R	R	E	I	G
Query Conservation
Alig confidence																																		.										.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation																																		.										.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Sequence		S	L	R	H	F	A	C	E	Q	N	L	L	S	R	P	D	G	S	A	S	F	L	Q	G	D	T	S	V	L	A	G	V	.	Y	G	P	A	E	V	K	N	K	.	.	.	.	.	.	.	.	.	.	.	A	T	L	E	V	I	L	R	P	.	.	.	.	.	.	.	K	I	G	L	P	G	V	A	E	K	S
Template Known Secondary structure											S			S	S	S	S								T	T								.										.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																		.										.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.												.	.	70	.	.	.	.	.	.								.	.	.	80	.	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		H	G	R	L	A	K	R	G	V	L	A	V	M	P	D	M	D	K	F	P	Y	T	.	V	R	V	V	S	E	I	T	E	S	N	G	S	S	S	M	A	S	V	C	G	A	S	L	A	L	M	D	A	G	V	P	I	K	A	A	V	A	G	I	A	M	G	L	V	K	E	G	D	N	Y	V	V	L	S	D	I
Query Conservation																								.
Alig confidence															.									.																																																		.	.	.
Template Conservation															.																																																											.	.	.
Template Sequence		R	E	R	L	I	R	N	T	C	E	A	V	V	.	L	G	T	L	H	P	R	T	S	I	T	V	V	L	Q	V	V	S	D	A	G	S	L	L	A	C	C	L	N	A	A	C	M	A	L	V	D	A	G	V	P	M	R	A	L	F	C	G	V	A	C	A	L	D	S	D	G	T	.	.	.	L	V	L	D	P
Template Known Secondary structure															.	G	G	G		S	S	S													S	S																	T	T				S	S											T	T			.	.	.				S
Template Predicted Secondary structure															.																																																											.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.			.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		L	G	D	E	D	H	L	G	D	M	D	F	K	V	A	.	.	G	S	R	D	G	I	S	A	L	Q	M	D	I	K	I	E	G	I	T	K	E	I	M	Q	V	A	L	N	Q	A	K	G	A	R	L	H	I	L	G	V	M	E	Q	A	I	N	A
Query Conservation																	.	.
Alig confidence																	.	.													.	.	.
Template Conservation																															.	.	.
Template Sequence		T	S	K	Q	E	K	E	A	R	A	V	L	T	F	A	L	D	S	V	E	R	K	L	L	M	S	S	T	K	.	.	.	G	L	Y	S	D	T	E	L	Q	Q	C	L	A	A	A	Q	A	A	S	Q	H	V	F	R	F	Y	R	E	S	L	Q	R
Template Known Secondary structure										S									T	T	T										.	.	.		S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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