Job Description P05055 Confidence 100.00% Date Thu Jan 5 10:58:40 GMT 2012 Rank 6 Aligned Residues 231 % Identity 22% Template c2nn6B_ PDB info PDB header:hydrolase/transferase Chain: B: PDB Molecule:exosome complex exonuclease rrp41; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 Resolution 3.35 Å

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		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	A	G	E	P	R	I	D	G	R	E	K	D	M	I	R	G	L	D	V	R	T	G	V	L	P	R	T	H	G	S	A	L	F	T	R	G	E	T	Q	A	L	V	T	A	T	L	G	T	A	R	D	A	Q	V	L	D	E	L	M	G	E	R	T	D	T	F	L	F	H	Y	N	F	P	P	Y	S	V	G
Query Conservation
Alig confidence																																																.										.
Template Conservation																																																.										.
Template Sequence		L	S	D	Q	G	Y	R	V	D	G	R	R	A	G	E	L	R	K	I	Q	A	R	M	G	V	F	A	Q	A	D	G	S	A	Y	I	E	Q	G	N	T	K	A	L	A	V	V	.	Y	G	P	H	E	I	R	G	S	.	R	A	R	A	L	P	D	R	A	L	V	N	C	Q	Y	S	S	A	T	F	S	T	G
Template Known Secondary structure				B	T	T	B		S	S	S	S		T	T	S									S		S	S	S	S	S								S	S								.								S	S	.	S						S	S											T	T	T	S	S
Template Predicted Secondary structure																																																.										.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		E	T	G	M	V	G	S	P	K	R	R	E	I	G	H	G	R	L	A	K	R	G	V	L	A	V	M	P	D	M	D	K	F	P	Y	T	.	V	R	V	V	S	E	I	T	E	S	N	G	S	S	S	M	A	S	V	C	G	A	S	L	A	L	M	D	A	G	V	P	I	K	A	A	V	A	G	I	A	M	G
Query Conservation																																						.
Alig confidence																													.									.
Template Conservation																													.
Template Sequence		E	R	K	R	R	P	H	G	D	R	K	S	C	E	M	G	L	Q	L	R	Q	T	F	E	A	A	I	.	L	T	Q	L	H	P	R	S	Q	I	D	I	Y	V	Q	V	L	Q	A	D	G	G	T	Y	A	A	C	V	N	A	A	T	L	A	V	L	D	A	G	I	P	M	R	D	F	V	C	A	C	S	A	G
Template Known Secondary structure		S				T	T	T	S	T																	T	T	.		G	G	G		T	T														S																	T					S	S
Template Predicted Secondary structure																													.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.			.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		L	V	K	E	G	D	N	Y	V	V	L	S	D	I	L	G	D	E	D	H	L	G	D	M	D	F	K	V	A	.	.	G	S	R	D	G	I	S	A	L	Q	M	D	I	K	I	E	G	I	T	K	E	I	M	Q	V	A	L	N	Q	A	K	G	A	R	L	H	I	L	G	V	M	E	Q	A	I	N	A	P	R
Query Conservation																															.	.
Alig confidence						.	.	.	.																						.	.													.	.	.
Template Conservation						.	.	.	.																																				.	.	.
Template Sequence		F	V	D	G	.	.	.	.	T	A	L	A	D	L	S	H	V	E	E	A	A	G	G	P	Q	L	A	L	A	L	L	P	A	S	G	Q	I	A	L	L	E	M	D	.	.	.	A	R	L	H	E	D	H	L	E	R	V	L	E	A	A	A	Q	A	A	R	D	V	H	T	L	L	D	R	V	V	R	Q	H	V
Template Known Secondary structure				T	T	.	.	.	.					S							T	S	S										T	T	T	T									.	.	.	S				T	T	S
Template Predicted Secondary structure						.	.	.	.																																				.	.	.
Template SS confidence
		163	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		546	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	A	S
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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