Return to main results Retrieve Phyre Job Id

Job DescriptionP05055
Confidence99.50%DateThu Jan 5 10:58:40 GMT 2012
Rank52Aligned Residues96
% Identity40%Templatec2k4kA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:general stress protein 13; PDBTitle: solution structure of gsp13 from bacillus subtilis
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   615....620.........630.........640.........650.........660.........670.........680. ........690...
Predicted Secondary structure 





























.




Query SS confidence 


































































.











Query Sequence  ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR. QGRIRLSIKEAT
Query Conservation         
 

 
 
  
  





  

  







   

  
 
    

 
 
     
 . 


 



   
Alig confidence 


































































.











Template Conservation       
 
  
 
 
  
   
  
 
     
 
   


             
  
   
  

     
 

 
   
Template Sequence  MAAKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQ
Template Known Secondary structure 





TT
TTTTGGGTSSS

S
GGGT

TT
TTTTS
Template Predicted Secondary structure 

































Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   694.....700.........710
Predicted Secondary structure 
















Query SS confidence 
















Query Sequence  EQSQPAAAPEAPAAEQG
Query Conservation                   
Alig confidence 
















Template Conservation                   
Template Sequence  AAPEKKESKPRKPKAAQ
Template Known Secondary structure  S



S

TTTT
TT
Template Predicted Secondary structure 





Template SS confidence 
















   81........90.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions