Job Description P05055 Confidence 98.28% Date Thu Jan 5 10:58:40 GMT 2012 Rank 114 Aligned Residues 148 % Identity 12% Template c2ckzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna-directed rna polymerase iii 25 kd PDBTitle: x-ray structure of rna polymerase iii subcomplex c17-c25. Resolution 3.2 Å

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		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.			.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		M	E	Q	A	I	N	A	P	R	G	D	I	S	E	F	A	P	R	I	H	T	I	K	I	N	P	D	K	I	K	D	V	I	G	K	G	G	S	V	I	.	.	R	A	L	T	E	E	T	G	T	T	I	E	I	E	D	D	G	T	V	K	I	A	A	T	D	G	E	K	A	K	H	A	I	R	R	I	E	E
Query Conservation																																										.	.
Alig confidence																																										.	.												.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	D	L	V	R	I	P	P	D	Q	F	H	R	D	T	I	S	A	I	T	H	Q	L	N	N	K	F	A	N	K	I	I	P	N	V	G	L	C	I	T	I	Y	D	L	L	T	V	E	E	G	Q	L	.	K	P	G	D	G	S	S	Y	I	N	V	.	.	.	.	.	.	.	.	.	.	.	T	F	R	A
Template Known Secondary structure										G	G	G	T	T	S															T	T				T	T	T																		.		S	S	S	S							.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70												.	.	.	.
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.													660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		I	T	A	E	I	E	V	G	R	V	Y	T	G	K	V	T	R	I	V	D	F	G	A	F	V	A	I	G	G	G	K	E	G	L	V	H	I	S	Q	I	A	D	K	R	V	.	.	.	.	.	.	.	.	.	.	.	.	E	K	V	T	D	Y	L	Q	M	G	Q	E	V	P	V	K	V	L	E	V	D	.	.
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		V	V	F	K	P	F	L	G	E	I	V	T	G	W	I	S	K	C	T	A	E	G	I	K	V	S	L	L	G	I	F	D	D	I	F	I	P	Q	N	M	L	F	E	G	C	Y	Y	T	P	E	E	S	A	W	I	W	P	M	D	T	K	L	Y	F	D	V	N	E	K	I	R	F	R	I	E	R	E	V	F	V
Template Known Secondary structure								T	T												T	T							T	T	S								T	T	T	S		T	T					T	T	T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	G	R	I	R	L	S	I	K	E	A	T	E	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	K	P	P	A	Y	A	L	L	G	S	C	Q	T	D
Template Known Secondary structure							S									S	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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