Job Description P05055 Confidence 98.53% Date Thu Jan 5 10:58:40 GMT 2012 Rank 99 Aligned Residues 73 % Identity 19% Template c2c35F_ PDB info PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii Resolution 2.70 Å

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		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.													660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		I	T	A	E	I	E	V	G	R	V	Y	T	G	K	V	T	R	I	V	D	F	G	A	F	V	A	I	G	G	G	K	E	G	L	V	H	I	S	Q	I	A	D	K	R	V	.	.	.	.	.	.	.	.	.	.	.	.	E	K	V	T	D	Y	L	Q	M	G	Q	E	V	P	V	K	V	L	E	V	D	R	.
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.																							.
Alig confidence																													.																		.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation																													.
Template Sequence		I	V	F	R	P	F	K	G	E	V	V	D	A	V	V	T	Q	V	N	K	V	G	L	F	T	E	I	.	G	P	M	S	C	F	I	S	R	H	S	I	P	S	E	M	E	F	D	P	N	S	N	P	P	C	Y	K	T	M	D	E	D	I	V	I	Q	Q	D	D	E	I	R	L	K	I	V	G	T	R	V	D
Template Known Secondary structure								T	T												T	T							.	T	T							G	G	G	S		S	S					S	S	S	S	S						T	T	S	S					T	T
Template Predicted Secondary structure																													.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		682	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	R	I	R	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	D	I	F	A	I
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions