Job Description P05055 Confidence 100.00% Date Thu Jan 5 10:58:40 GMT 2012 Rank 7 Aligned Residues 235 % Identity 26% Template c2ba1D_ PDB info PDB header:rna binding protein Chain: D: PDB Molecule:archaeal exosome complex exonuclease rrp41; PDBTitle: archaeal exosome core Resolution 2.70 Å

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		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	V	L	A	G	E	P	R	I	D	G	R	E	K	D	M	I	R	G	L	D	V	R	T	G	V	L	P	R	T	H	G	S	A	L	F	T	R	G	E	T	Q	A	L	V	T	A	T	L	G	T	A	R	D	A	Q	V	L	D	E	L	M	G	E	R	T	D	T	F	L	F	H	Y	N	F	P	P	Y	S
Query Conservation
Alig confidence																																																		.										.	.
Template Conservation																																																		.										.	.
Template Sequence		E	K	L	I	V	D	G	L	R	L	D	G	R	K	F	D	E	L	R	P	I	K	I	E	A	S	V	L	K	R	A	D	G	S	C	Y	L	E	M	G	K	N	K	V	I	A	A	V	.	F	G	P	R	E	V	H	P	R	.	.	H	L	Q	D	P	S	K	A	I	I	R	Y	R	Y	N	M	A	P	F	S
Template Known Secondary structure				S			T	T			T	T	S		B	T	T										S			S	S	S	S								T	T								.							S	S	G	.	.	G	G			S	S	S											T	T	S
Template Predicted Secondary structure																																																		.										.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		V	G	E	T	G	M	V	G	S	P	K	R	R	E	I	G	H	G	R	L	A	K	R	G	V	L	A	V	M	P	D	M	D	K	F	P	Y	T	.	V	R	V	V	S	E	I	T	E	S	N	G	S	S	S	M	A	S	V	C	G	A	S	L	A	L	M	D	A	G	V	P	I	K	A	A	V	A	G	I	A
Query Conservation																																								.
Alig confidence										.																					.									.
Template Conservation										.																					.
Template Sequence		V	E	E	R	K	R	P	G	.	P	D	R	R	S	I	E	I	S	K	V	S	K	E	A	F	E	A	V	I	.	M	K	E	L	F	P	R	S	A	I	D	I	F	V	E	V	L	Q	A	D	A	G	S	R	T	A	C	L	N	A	A	S	V	A	L	V	D	A	G	V	P	M	K	G	M	I	T	S	V	A
Template Known Secondary structure		S	S	S				S	S	.																		T	T	B	.		G	G	G	S	T	T														T	T																T	T			B	S	S
Template Predicted Secondary structure										.																					.
Template SS confidence
		86	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		M	G	L	V	K	E	G	D	N	Y	V	V	L	S	D	I	L	G	D	E	D	H	L	G	D	M	D	F	K	V	A	G	S	.	.	R	D	G	I	S	A	L	Q	M	D	I	K	I	E	G	I	T	K	E	I	M	Q	V	A	L	N	Q	A	K	G	A	R	L	H	I	L	G	V	M	E	Q	A	I	N	A
Query Conservation																																			.	.
Alig confidence						.	.	.	.																										.	.
Template Conservation						.	.	.	.
Template Sequence		V	G	K	A	.	.	.	.	D	G	Q	L	V	L	D	P	M	K	E	E	D	N	F	G	E	A	D	M	P	F	A	F	L	I	R	N	G	K	I	E	S	I	A	L	L	Q	M	D	G	R	M	T	R	D	E	V	K	Q	A	I	E	L	A	K	K	G	A	L	Q	I	Y	E	M	Q	R	E	A	I	L	R
Template Known Secondary structure						.	.	.	.	T	T					S									S	S											T	T
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		164	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		544	.	.	.	.	.	550
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	G	D	I	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	I	E	V	G	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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