Job Description P05055 Confidence 100.00% Date Thu Jan 5 10:58:40 GMT 2012 Rank 19 Aligned Residues 230 % Identity 22% Template c2ba0I_ PDB info PDB header:rna binding protein Chain: I: PDB Molecule:archeal exosome rna binding protein rrp42; PDBTitle: archaeal exosome core Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	L	H	A	I	E	K	N	V	V	R	S	R	V	L	A	G	E	P	R	I	D	G	R	E	K	D	M	I	R	G	L	D	V	R	T	G	V	L	P	R	T	H	G	S	A	L	F	T	R	G	E	T	Q	A	L	V	T	A	T	L	G	T	A	R	D	A	Q	V	L	D	E	L	M	G	E	R	T	D
Query Conservation
Alig confidence															.																																																.			.	.	.	.
Template Conservation															.																																																.			.	.	.	.
Template Sequence		D	I	L	V	D	I	K	R	D	Y	V	L	S	.	K	L	R	D	N	E	R	I	D	G	R	G	F	D	E	F	R	K	V	E	I	I	P	N	V	I	E	K	A	E	G	S	A	L	V	K	L	G	D	T	Q	V	V	V	G	V	K	.	M	Q	.	.	.	.	P	G	E	P	Y	P	D	T	P	D	R	G
Template Known Secondary structure															.				T	T			T	T				T	T													T	T	S	S								T	T									.			.	.	.	.						T	T		T	T	S
Template Predicted Secondary structure															.																																																.			.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.					.	.	.	.	70	.	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.									.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.
Query Sequence		T	F	L	F	H	Y	N	F	P	P	Y	S	V	G	E	T	G	M	V	G	S	P	K	R	R	E	I	G	H	G	R	L	A	K	R	G	V	L	A	V	.	.	.	.	.	.	.	.	M	P	D	M	D	K	F	P	Y	T	V	R	V	V	S	E	I	T	E	S	N	G	S	S	S	M	A	S	V	C	G	A
Query Conservation																																										.	.	.	.	.	.	.	.
Alig confidence																				.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																				.	.	.
Template Sequence		V	I	I	V	N	A	E	L	V	P	L	A	S	P	T	F	E	P	.	.	.	P	D	E	N	S	I	E	L	A	R	V	V	D	R	G	I	R	E	S	E	A	V	D	L	S	K	L	V	I	E	E	G	E	K	V	W	I	V	F	V	D	I	H	A	L	D	D	D	G	N	L	L	D	A	S	A	L	A	A
Template Known Secondary structure											S	T	T		T	T				.	.	.																			T	T		B		G	G	G	G	B	S	S	T	T	S															S	S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		447	.	.	450	.	.	.	.														.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.		.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.																																																.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																																																.
Query Sequence		S	L	A	L	M	D	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	I	K	A	A	V	A	G	I	A	M	G	L	V	K	E	G	D	N	Y	V	V	L	S	D	I	L	G	D	E	D	H	L	G	D	M	D	F	K	V	A	G	S	R	D	G	.	I	S	A	L	Q	M	D	I	K	I	E
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.																																																.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																													.										.
Template Conservation																																						.	.	.	.																																							.
Template Sequence		I	A	A	L	M	N	T	K	V	P	A	E	R	F	D	L	G	E	D	Y	L	L	P	V	R	D	L	P	V	S	V	T	S	L	I	V	.	.	.	.	G	N	K	Y	L	V	D	P	S	R	E	E	M	S	V	G	D	T	T	L	T	I	T	T	D	K	D	D	N	V	V	A	M	Q	K	S	G	G	.	Y
Template Known Secondary structure							T					T	G	G	G	T	S	S	S						B													.	.	.	.	T	T					S			T	T	G	G	G	G		S									T	T										S	S	.
Template Predicted Secondary structure																																						.	.	.	.																																							.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	T	K	E	I	M	Q	V	A	L	N	Q	A	K	G	A	R	L	H	I	L	G	V	M	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	D	E	K	L	F	D	E	L	L	D	V	S	I	N	C	A	R	K	L	R	E	K	F	K
Template Known Secondary structure																								G	G	G
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions