Job Description P05055 Confidence 99.24% Date Thu Jan 5 10:58:40 GMT 2012 Rank 73 Aligned Residues 186 % Identity 18% Template c1hh2P_ PDB info PDB header:transcription regulation Chain: P: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima Resolution 2.1 Å

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		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.		.	.	.	530	.	.	.	.	.	.	.	.	.	540				.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.			.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure																																.															.	.	.																		.	.
Query SS confidence																																.															.	.	.																		.	.
Query Sequence		G	S	R	D	G	I	S	A	L	Q	M	D	I	K	I	E	G	I	T	K	E	I	M	Q	V	A	L	N	Q	A	.	K	G	A	R	L	H	I	L	G	V	M	E	Q	A	.	.	.	I	N	A	P	R	G	D	I	S	E	F	A	P	R	I	H	T	.	.	I	K	I	N	P	D	K	I	K	D	V	I	G
Query Conservation																																.															.	.	.																		.	.
Alig confidence																																.															.	.	.																		.	.
Template Conservation
Template Sequence		M	N	I	G	L	L	E	A	L	D	Q	L	E	E	E	K	G	I	S	K	E	E	V	I	P	I	L	E	K	A	L	V	S	A	Y	R	K	N	F	G	N	S	K	N	V	E	V	V	I	D	R	N	T	G	N	I	K	V	Y	Q	L	L	E	V	V	E	E	V	E	D	P	A	T	Q	I	S	L	E	E	A
Template Known Secondary structure					S	S		S	S	T	T	T	T	S	S	S	S																					T	T	T		S	S	S								S	T	T													S	S		S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		571	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.				.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		K	G	G	S	V	I	R	A	L	T	E	E	T	G	T	T	I	E	I	E	D	D	G	T	V	K	I	A	A	T	D	G	E	K	A	K	H	A	I	R	R	I	E	E	I	T	A	E	.	.	.	I	E	V	G	R	V	Y	T	G	K	V	T	R	I	V	D	F	G	A	F	V	A	I	G	G	G	K	E	G
Query Conservation																																																		.	.	.
Alig confidence																																																		.	.	.																								.
Template Conservation																																																																												.
Template Sequence		K	K	I	D	P	L	A	E	V	G	S	I	V	K	K	E	L	N	V	K	N	F	G	R	I	A	A	Q	T	A	K	Q	V	L	I	Q	R	I	R	E	L	E	K	E	K	Q	F	E	K	Y	S	E	L	K	G	T	V	T	T	A	E	V	I	R	V	M	G	E	W	A	D	I	R	I	.	G	K	L	E	T
Template Known Secondary structure						T	T			T	T												S	S	S		S	G	G	G													T	T			S	S			T	T			T	T												S	S							.	T	T
Template Predicted Secondary structure																																																																												.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.
		648	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.				.	.	.	.	.
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		L	V	H	I	S	Q	I	A	D	K	R	V	E	K	V	T	D	Y	L	Q	M	G	Q	E	V	P	V	K	V	L	E	V	D	R	Q	G	R	.	.	.	I	R	L	S	I
Query Conservation																																							.	.	.
Alig confidence												.	.	.	.	.	.																						.	.	.
Template Conservation												.	.	.	.	.	.
Template Sequence		R	L	P	K	K	E	W	I	P	G	.	.	.	.	.	.	E	E	I	K	A	G	D	L	V	K	V	Y	I	I	D	V	V	K	T	T	K	G	P	K	I	L	V	S	R
Template Known Secondary structure					G	G	G	S		T	T	.	.	.	.	.	.					T	T														T	T								S
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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