Job Description P05055 Confidence 100.00% Date Thu Jan 5 10:58:40 GMT 2012 Rank 1 Aligned Residues 569 % Identity 45% Template c1e3hA_ PDB info PDB header:polyribonucleotide transferase Chain: A: PDB Molecule:guanosine pentaphosphate synthetase; PDBTitle: semet derivative of streptomyces antibioticus pnpase/gpsi2 enzyme Resolution 2.6 Å

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		3	.	.	.	.	.	.						10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.																											.
Query SS confidence									.	.	.	.	.																											.
Query Sequence		N	P	I	V	R	K	F	.	.	.	.	.	Q	Y	G	Q	H	T	V	T	L	E	T	G	M	M	A	R	Q	A	T	A	A	V	M	V	S	M	.	D	D	T	A	V	F	V	T	V	V	G	Q	K	K	A	K	P	G	Q	D	F	F	P	L	T	V	N	Y	Q	E	R	T	Y	A	A	G	R	I	P	G	S
Query Conservation									.	.	.	.	.																											.
Alig confidence									.	.	.	.	.																											.
Template Conservation
Template Sequence		E	T	H	Y	A	E	A	V	I	D	N	G	A	F	G	T	R	T	I	R	F	E	T	G	R	L	A	R	Q	A	A	G	S	A	V	A	Y	L	D	D	D	T	X	V	L	S	A	T	T	A	S	K	N	P	K	D	Q	L	D	F	F	P	L	T	V	D	V	E	E	R	X	Y	A	A	G	K	I	P	G	S
Template Known Secondary structure													G	G	G										S	S	S		T	T	S	S								T	T	T											S	S			T	T		S	S											G	G	G	G	T					S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	R	R	E	G	R	P	S	E	G	E	T	L	I	A	R	L	I	D	R	P	I	R	P	L	F	P	E	G	F	V	N	E	V	Q	V	I	A	T	V	V	S	V	N	P	Q	V	N	P	D	I	V	A	M	I	G	A	S	A	A	L	S	L	S	G	I	P	F	N	G	P	I	G	A	A	R	V	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	F	R	R	E	G	R	P	S	E	D	A	I	L	T	C	R	L	I	D	R	P	L	R	P	S	F	K	K	G	L	R	N	E	I	Q	V	V	A	T	I	X	A	L	N	P	D	H	L	Y	D	V	V	A	I	N	A	A	S	A	S	T	Q	L	A	G	L	P	F	S	G	P	I	G	G	V	R	V	A	L
Template Known Secondary structure		T	T	S	S			S																				B		T	T	B		S													T	T	S																	T	T		S	B
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.																		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	D	Q	Y	V	L	N	P	T	Q	D	E	L	K	E	S	K	L	D	L	V	V	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	A	A	V	L	M	V	E	S	E	A	Q	L	L	S	E	D	Q	M	L	G	A	V	V	F	G	H	E	Q	Q	Q	V	V	I	Q	N	I
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	G	Q	W	V	A	F	P	T	H	T	E	L	E	D	A	V	F	D	X	V	V	A	G	R	V	L	E	D	G	D	V	A	I	X	X	V	E	A	E	A	T	E	K	T	I	Q	L	V	K	D	G	A	E	A	P	T	E	E	V	V	A	A	G	L	D	A	A	K	P	F	I	K	V	L	C	K	A	Q
Template Known Secondary structure			T	T					S							T	T													T	T	S													T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		N	E	L	V	K	E	A	G	K	P	R	W	D	W	Q	P	E	P	.	V	N	E	A	L	N	A	R	V	A	A	L	A	E	A	R	L	S	D	A	Y	R	I	T	D	K	Q	E	R	Y	A	Q	V	D	V	I	K	S	E	T	I	A	T	L	L	A	E	D	E	T	L	D	E	N	E	L	G	E	I	L	H
Query Conservation																				.
Alig confidence																				.																																																			.
Template Conservation																																																																							.
Template Sequence		A	D	L	A	A	K	A	A	K	P	T	G	E	F	P	V	F	L	D	Y	Q	D	D	V	L	E	A	L	S	A	A	V	R	P	E	L	S	A	A	L	T	I	A	G	K	Q	D	R	E	A	E	L	D	R	V	K	A	L	A	A	E	K	L	L	P	E	F	E	G	.	R	E	K	E	I	S	A	A	Y	R
Template Known Secondary structure																	B			S	S																				T	T			S																			T	T	T	T	S	T	T	.
Template Predicted Secondary structure																																																																							.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	E	K	N	V	V	R	S	R	V	L	A	G	E	P	R	I	D	G	R	E	K	D	M	I	R	G	L	D	V	R	T	G	V	L	P	R	T	H	G	S	A	L	F	T	R	G	E	T	Q	A	L	V	T	A	T	L	G	T	A	R	D	A	Q	V	L	D	E	L	M	G	E	R	T	D	T	F	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	T	K	S	L	V	R	E	R	V	I	A	E	K	K	R	I	D	G	R	G	V	T	D	I	R	T	L	A	A	E	V	E	A	I	P	R	V	H	G	S	A	L	F	E	R	G	E	T	Q	I	L	G	V	T	T	L	N	X	L	R	X	E	Q	Q	L	D	T	L	S	P	V	T	R	K	R	Y	X	H
Template Known Secondary structure															T		B		T	T	S		B	T	T												S	S	S	S	S								T	T												G	G	G	S					S	S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	N	F	P	P	Y	S	V	G	E	T	G	M	V	G	S	P	K	R	R	E	I	G	H	G	R	L	A	K	R	G	V	L	A	V	M	P	D	M	D	K	F	P	Y	T	V	R	V	V	S	E	I	T	E	S	N	G	S	S	S	M	A	S	V	C	G	A	S	L	A	L	M	D	A	G	V	P	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Y	N	F	P	P	Y	S	V	G	E	T	G	R	V	G	S	P	K	R	R	E	I	G	H	G	A	L	A	E	R	A	I	V	P	V	L	P	T	R	E	E	F	P	Y	A	I	R	Q	V	S	E	A	L	G	S	N	G	S	T	S	X	G	S	V	C	A	S	T	X	S	L	L	N	A	G	V	P	L	K
Template Known Secondary structure							G	G	G	G	T						S	S																	G	G	G				T	T	T	S														S	S																		T				S
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.					.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		A	A	V	A	G	I	A	M	G	L	V	K	E	G	.	.	.	.	D	N	Y	V	V	L	S	D	I	L	G	D	E	D	H	L	G	D	M	D	F	K	V	A	G	S	R	D	G	I	S	A	L	Q	M	D	I	K	I	E	G	I	T	K	E	I	M	Q	V	A	L	N	Q	A	K	G	A	R	L	H	I	L
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.
Template Conservation
Template Sequence		A	P	V	A	G	I	A	X	G	L	I	S	Q	E	I	N	G	E	T	H	Y	V	A	L	T	D	I	L	G	A	E	D	A	F	G	D	X	D	F	K	V	A	G	T	K	E	F	V	T	A	L	Q	L	D	T	K	L	D	G	I	P	A	S	V	L	A	A	A	L	K	Q	A	R	D	A	R	L	H	I	L
Template Known Secondary structure		S															T	T								S	S			S							S									S	S												S
Template Predicted Secondary structure
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.				.	.	.	.	.	570	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		G	V	M	E	Q	A	I	N	A	P	R	G	D	I	S	E	F	A	P	R	I	H	T	I	K	I	N	P	D	K	.	.	.	I	K	D	V	I	G	K	G	G
Query Conservation																																.	.	.
Alig confidence													.																			.	.	.
Template Conservation													.
Template Sequence		D	V	X	X	E	A	I	D	T	P	D	.	E	X	S	P	N	A	P	R	I	I	Q	I	Q	E	D	T	G	A	E	I	Y	I	G	A	A	D	G	P	A	A
Template Known Secondary structure									S	S			.				T	T	S		B								S									B	S	S
Template Predicted Secondary structure													.
Template SS confidence
		563	.	.	.	.	.	.	570	.	.	.		.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.