 |
| Job Description | P77249 | | Confidence | 46.23% | Date | Thu Jan 5 12:26:49 GMT 2012 |
| Rank | 50 | Aligned Residues | 64 |
| % Identity | 17% | Template | c3qgaD_ |
| PDB info |
PDB header:hydrolase | Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; |
PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
|
| Resolution | 3.00 Å |
|
| | |
34 | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure | |
 | |  |
|
|
|
|
| | | | | | | | |
|
|
|
|
| | | | | | | | |
|
|
|
|
|
|
|
|
|
| | . | . | . | . | . | . | . | . | . | . | . | | |
|
|
| | | | |
|
|
|
| | | | | | | | |
|
|
|
|
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
I | I | Y | P | A | D | A | K | Q | T | A | V | W | I | R | N | S | H | T | N | E | R | F | L | V | N | S | W | I | E | N | S | S | G | V | K | E | K | S | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | I | T | P | P | L | F | V | S | E | P | K | S | E | N | T | L | R | I | I | Y | T | G | P | P |
| Query Conservation | |
|
| | | | | | | | | |
| |
| |
| | | | | | | | | | | | | | | | | | | | | | | |
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
| | |
| |
| | | |
| |
|
|
| | | | | | |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
| |
|
| |
|
| | | | |
| |
| |
| |
|
|
|
| . |
|
|
|
|
|
| |
|
| |
|
|
| |
|
| |
|
|
| | |
| |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | | | |
| |
|
| | |
|
| |
| Template Sequence | |
I | E | L | N | A | G | K | E | I | T | E | L | K | V | T | N | K | G | P | K | S | . |
L | H | V | G | S | H | F | H | F | F | E | A | N | R | A | L | E | F | D | R | E | K | A | Y | G | K | R | L | D | I | P | S | G | N | T | L | R | I | G | A | G | E | T | K | T | V | H | L | I | P | I | G | G | S |
| Template Known Secondary structure | |
|
| T | T | T | T |
|
|
| | | | | | | |
| S | S | S |
| . | | | | | T | T | S |
| G | G | G | S |
| T | T | | | S |
| G | G | G | G | T | T | | | |
| S |
| T | T |
| | | | |
| T | T |
| | | | | | | | |
| S | T | T |
| Template Predicted Secondary structure | |
| | |
|
|
|
|
| | | | | | | | |
|
|
|
|
| . | | | | |
|
|
|
|  | | |
|
| | | | |
|
| | | |
|
|
|
|
|
|
|
|
|
|
|
| | | | |
|
|
|
| | | | | | | | | |
|
|
|
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | |
. | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
