Job Description P77249 Confidence 7.92% Date Thu Jan 5 12:26:49 GMT 2012 Rank 87 Aligned Residues 73 % Identity 10% Template c2aenH_ PDB info PDB header:viral protein Chain: H: PDB Molecule:outer capsid protein vp4, vp8* core; PDBTitle: crystal structure of the rotavirus strain ds-1 vp8* core Resolution 1.60 Å

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		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	I	Q	L	Q	E	L	P	A	E	A	P	D	T	L	K	F	S	R	S	G	N	Y	I	N	V	H	N	P	S	P	F	Y	V	T	L	V	N	L	Q	V	G	S	Q	K	L	G	N	A	M	A	A	P	R	V	N	S	Q	I	P	L	P	S	G	V	Q	G	K	L	K	F	Q	T	V	N
Query Conservation
Alig confidence													.																																																									.	.	.
Template Conservation													.																																																									.	.	.
Template Sequence		Y	Q	P	T	T	F	K	P	P	N	D	.	Y	W	L	L	I	S	S	N	T	N	G	V	V	Y	E	S	T	N	N	N	D	F	W	T	A	V	I	A	V	E	P	H	V	S	Q	T	N	R	Q	Y	I	L	F	G	E	N	K	Q	F	N	V	E	N	N	S	D	.	.	.	K	W	K	F	F	E
Template Known Secondary structure				S							T	T	.									S	S									S	S	S										S	S											T	T											S	S	.	.	.	S
Template Predicted Secondary structure													.																																																									.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions