Job Description P77249 Confidence 100.00% Date Thu Jan 5 12:26:49 GMT 2012 Rank 2 Aligned Residues 195 % Identity 32% Template c1z9sA_ PDB info PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Resolution 2.20 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	A	G	G	I	A	L	G	A	T	R	I	I	Y	P	A	D	A	K	Q	T	A	V	W	I	R	N	S	H	T	N	E	R	F	L	V	N	S	W	I	E	N	S	S	G	V	K	E	K	S	F	I	I	T	P	P	L	F	V	S	E	P	K	S	E	N	T	L	R	I	I	Y	T	G	P	P	L	A	A
Query Conservation
Alig confidence																																			.															.	.
Template Conservation																																			.															.	.
Template Sequence		S	K	E	Y	G	V	T	I	G	E	S	R	I	I	Y	P	L	D	A	A	G	V	M	V	S	V	K	N	T	Q	D	Y	P	.	V	L	I	Q	S	R	I	Y	D	E	N	K	E	K	.	.	P	F	V	V	T	P	P	L	F	R	L	D	A	K	Q	Q	N	S	L	R	I	A	Q	A	G	G	V	F	P	R
Template Known Secondary structure										S	S	S						T	T		S										S	S	S		.										T	T	S			.	.						S	S						T	T											S					S
Template Predicted Secondary structure																																			.															.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	E	S	L	F	W	M	N	V	K	T	I	P	S	V	D	K	N	A	L	N	G	R	N	V	L	Q	L	A	I	L	S	R	M	K	L	F	L	R	P	I	Q	L	Q	E	L	P	A	E	A	P	D	T	L	K	F	S	R	S	G	N	Y	I	N	V	H	N	P	S	P	F	Y	V	T	L	V	N	L	Q
Query Conservation
Alig confidence																				.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.
Template Sequence		D	K	E	S	L	K	W	L	C	V	K	G	I	P	P	D	V	G	.	.	.	.	.	.	V	F	V	Q	F	A	I	N	N	C	I	K	L	L	V	R	P	N	E	L	K	G	T	P	I	Q	F	A	E	N	L	S	W	K	V	D	G	G	K	L	I	A	E	N	P	S	P	F	Y	M	N	I	G	E	L	T
Template Known Secondary structure		S	S																	.	.	.	.	.	.																		T	T	S		S		G	G	G	T	G	G	G							T	T								S	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.							.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	S	Q	K	L	G	N	A	M	A	A	P	R	V	N	S	Q	I	P	L	P	S	G	V	Q	G	K	L	K	F	Q	T	V	N	D	Y	G	S	V	T	P	V	R	E	V	N	L
Query Conservation
Alig confidence																								.	.	.	.
Template Conservation																								.	.	.	.
Template Sequence		F	G	G	K	S	I	P	S	H	Y	I	P	P	K	S	T	W	A	F	D	L	A	.	.	.	.	R	N	V	S	W	R	I	I	N	D	Q	G	G	L	D	R	L	Y	S	K	N	V
Template Known Secondary structure			T	T										T	T									.	.	.	.								B		T	T	S		B
Template Predicted Secondary structure																								.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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