Return to main results Retrieve Phyre Job Id

Job DescriptionP77249
Confidence100.00%DateThu Jan 5 12:26:49 GMT 2012
Rank5Aligned Residues184
% Identity29%Templatec1qpxA_
PDB info PDB header:chaperoneChain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60......... 70.........80.........90........ .100.
Predicted Secondary structure 

















..













..


Query SS confidence 











































. .




























. .


Query Sequence  GIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVK. . EKSFIITPPLFVSEPKSENTLRIIYTGPP. . LAA
Query Conservation 

 
  



         
 
 
                    ..   






  
 
   
 


      ..

 
Alig confidence 











































..




























..


Template Conservation 

 
  



        

 
 
     
 


 

           







 

 
   
 


        

 
Template Sequence  AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQ
Template Known Secondary structure 
S
STTSS

SSS
TTS
SSSSSS
TT

GGGGGS
S
Template Predicted Secondary structure 






































Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   102.......110.........120.........130.........140.........150.... .....160.........170.........180
Predicted Secondary structure 




















.





Query SS confidence 




















































.

























Query Sequence  DRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPD. TLKFSRSGNYINVHNPSPFYVTLVNL
Query Conservation 



   
 
 


            
 
     



 

  
         . 
        
 
 
 

  
 
  
Alig confidence 














.............
























.

























Template Conservation 





 


 


 ............. 


  






  
           
        
 
 




 


  
Template Sequence  DRESLFYFNLREIPP. . . . . . . . . . . . . IALCTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGL
Template Known Secondary structure  SS


.............


GGG


TT


GGG
TT
SSS
Template Predicted Secondary structure 




.............














Template SS confidence 















































































   81........90..... ....100.........110.........120.........130.........140.......
 
   181.... ....190.........200.........210.........220....
Predicted Secondary structure 

.....




















Query SS confidence 




. . . . .






































Query Sequence  QVGSQ. . . . . KLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPV
Query Conservation       .....      
 
               
    


 
     
Alig confidence 




.....



















..
















Template Conservation   
             

 
 
         ..  
    




     
Template Sequence  GGSEKQAEEGEFETVMLSPRSEQTVKSANY. . NTPYLSYINDYGGRPVL
Template Known Secondary structure  SSS




TT



..SS


TTS


Template Predicted Secondary structure 



















..





Template SS confidence 
















































   157..160.........170.........180...... ...190.........200...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions