Job Description P77249 Confidence 5.90% Date Thu Jan 5 12:26:49 GMT 2012 Rank 98 Aligned Residues 74 % Identity 9% Template c1kriA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:vp4; PDBTitle: nmr solution structures of the rhesus rotavirus vp4 sialic2 acid binding domain without ligand Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	I	Q	L	Q	E	L	P	A	E	A	P	D	T	L	K	F	S	R	S	G	N	Y	I	N	V	H	N	P	S	P	F	Y	V	T	L	V	N	L	Q	V	G	S	Q	K	L	G	N	A	M	A	A	P	R	V	N	S	Q	I	P	L	P	S	G	V	Q	G	K	L	K	F	Q	T	V	N
Query Conservation
Alig confidence													.																																																										.	.
Template Conservation													.																																																										.	.
Template Sequence		Y	Q	P	T	T	F	N	P	P	V	D	.	Y	W	M	L	L	A	P	T	A	A	G	V	V	V	E	G	T	N	N	T	D	R	W	L	A	T	I	L	V	E	P	N	V	T	S	E	T	R	S	Y	T	L	F	G	T	Q	E	Q	I	T	I	A	N	A	S	Q	T	.	.	Q	W	K	F	I	D
Template Known Secondary structure		B									S	S	.								S	S	S									S	S	S										S	S											T	T												S	S	.	.
Template Predicted Secondary structure													.																																																										.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions