Job Description P36672 Confidence 100.00% Date Thu Jan 5 11:53:37 GMT 2012 Rank 1 Aligned Residues 379 % Identity 12% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	K	K	A	A	R	H	N	M	K	W	H	E	Q	L	I	S	H	F	A	V	I	F	F	P	L	L	P	A	L	I	S	G	G	L	I	L	G	F	R	N	V	I	G	D	L	P	M	S	N	G	Q	T	L	A	Q	M	Y	P	S	L	Q	T	I	Y	D	F	L	W	L	I	G	E	A	I	F	F	Y	L
Query Conservation
Alig confidence																																																		.
Template Conservation																																																		.
Template Sequence		E	K	Y	V	M	P	V	A	G	K	V	A	E	Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	.	S	E	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M	A	L	I	A
Template Known Secondary structure		T	T	T	S																					G	G	G	T	T													T				T	T	T	.	T	T						T		S			T	T	G	G	G								T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		P	V	G	I	C	W	S	A	V	K	K	M	G	G	T	P	I	L	G	I	V	L	G	V	T	L	V	S	P	Q	L	M	N	A	Y	L	L	G	Q	Q	L	P	E	V	.	.	.	.	.	W	D	F	G	M	F	S	I	A	K	V	G	Y	Q	A	Q	V	I	P	A	L	L	A	G	L	A	L	G	V	I	E
Query Conservation																																														.	.	.	.	.
Alig confidence																																														.	.	.	.	.
Template Conservation
Template Sequence		V	F	G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V
Template Known Secondary structure														T	S																	S		S							T	T	T	S							S				T	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		247	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300						.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.																																																					.	.	.	.	.
Query SS confidence				.	.	.	.	.																																																					.	.	.	.	.
Query Sequence		T	R	.	.	.	.	.	L	K	R	I	V	P	D	Y	L	Y	L	V	V	V	P	V	C	S	L	I	L	A	V	F	L	A	H	A	L	I	G	P	F	G	R	M	I	G	D	G	V	A	F	A	V	R	H	L	M	T	G	S	.	.	.	.	.	F	A	P	I	G	A	A	L	F	G	F	L	Y	A	P	L
Query Conservation				.	.	.	.	.																																																					.	.	.	.	.
Alig confidence				.	.	.	.	.																																																					.	.	.	.	.
Template Conservation
Template Sequence		Q	K	K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L	W	G	A	V	I	A	V	I	L	V	H	V	L
Template Known Secondary structure			T	T		S					T	T	S																														T	S	S	S		S									T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		317	.	.	320	.	.	.	.	.	.							.	.	.	330	.	.	.	.	.	.	.	.	.																340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	T	G	V	H	Q	T	T	L	.	.	.	.	.	.	A	I	D	L	Q	M	I	Q	S	M	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	W	P	L	I	A	L	S	N	I	A	Q	G	S	A	V	I	G	I	I	I	S	S	R	K	H	N	E	R	E	I	S	V	P	A
Query Conservation												.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	A	C	G	I	H	G	A	T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L	F	A	R	S	Q	Q	L	K	S	L	G	R	L	S
Template Known Secondary structure				T	T	S						T																					T	T						S										T	S		S	S	S	S	S	T													S										T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.					.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.						.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.																																												.	.	.	.	.
Query SS confidence																		.	.	.	.																																												.	.	.	.	.
Query Sequence		A	I	S	A	W	L	G	V	T	E	P	A	M	Y	G	I	.	.	.	.	N	L	K	Y	R	F	P	M	L	C	A	M	I	G	S	G	L	A	G	L	L	C	G	L	N	G	V	M	A	N	G	I	G	V	G	G	L	P	G	I	L	S	I	.	.	.	.	.	Q	P	S	Y	W	Q	V	F	A	L	A	M
Query Conservation																		.	.	.	.																																												.	.	.	.	.
Alig confidence																		.	.	.	.																																												.	.	.	.	.
Template Conservation
Template Sequence		I	A	P	G	I	F	N	I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T	P	I	L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q
Template Known Secondary structure		S					T	T									T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S									T	T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.									.	.	.	.	.	.	.	470	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.
Query Sequence		A	I	A	I	I	I	P	I	V	L	T	S	F	I	Y	Q	.	.	.	.	.	.	.	.	R	K	Y	R	L	G	T	L	D
Query Conservation																		.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	N	F	A	L	A	F	V	I	Y	L	P	F	L	K	I	W	D	K	Q	K	I	A	E	E	K	G	E	A	A	A	E
Template Known Secondary structure																												T	T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.