Job Description P77260 Confidence 6.59% Date Thu Jan 5 12:26:57 GMT 2012 Rank 83 Aligned Residues 60 % Identity 15% Template d1m9dc_ SCOP info Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Resolution 1.90

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		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.										.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.																																				.
Query SS confidence																													.	.	.	.	.	.	.	.	.																																				.
Query Sequence		H	V	M	R	D	V	V	T	S	Y	A	Q	A	V	D	V	K	L	A	Q	W	I	E	D	N	V	T	.	.	.	.	.	.	.	.	.	F	P	S	T	M	V	D	R	I	V	P	A	V	T	E	D	T	L	A	K	I	E	Q	L	T	G	V	R	D	P	A	G	V	A	C	.	E	P	F	R	Q	W	V	I
Query Conservation																													.	.	.	.	.	.	.	.	.																																				.
Alig confidence																	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.											.															.	.	.								.
Template Conservation																	.	.	.	.	.	.	.																									.															.	.	.
Template Sequence		Q	M	L	K	E	T	I	N	E	E	A	A	E	W	D	.	.	.	.	.	.	.	R	T	H	P	P	A	M	G	P	L	P	P	G	Q	I	R	E	P	R	G	S	D	I	A	.	G	T	T	S	T	L	Q	E	Q	I	G	W	M	T	.	.	.	H	N	P	P	I	P	V	G	E	I	Y	K	R	W	I	I
Template Known Secondary structure																	.	.	.	.	.	.	.			S					S				T	T											T	.	T	S	S											T	.	.	.	S	S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.																									.															.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.								.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		260
Predicted Secondary structure
Query SS confidence
Query Sequence		E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		136

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions