Job Description P0AEI1 Confidence 38.42% Date Thu Jan 5 11:23:24 GMT 2012 Rank 148 Aligned Residues 106 % Identity 13% Template c3nhzA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.										.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.							.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.							.	.	.	.	.	.	.	.	.
Query Sequence		M	T	K	K	L	H	I	K	T	W	G	C	Q	M	N	E	Y	D	S	S	K	M	A	D	L	L	D	A	T	H	G	Y	Q	L	T	.	.	D	V	A	E	E	A	.	.	.	.	.	.	.	.	.	D	V	L	L	L	N	T	C	S	I	R	E	K	A	Q	E	K	V	F	H	Q	L	G	R	W	K	L	L
Query Conservation																																					.	.							.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.																			.						.	.							.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation									.	.	.	.																			.																																					.	.	.	.	.	.	.
Template Sequence		M	R	Q	R	I	L	V	.	.	.	.	V	D	D	D	A	S	L	A	E	M	L	T	I	V	L	R	G	E	.	G	F	D	T	A	V	I	G	D	G	T	Q	A	L	T	A	V	R	E	L	R	P	D	L	V	L	L	D	L	M	L	P	G	M	N	G	.	.	.	.	.	.	.	I	D	V	C	R	V	L
Template Known Secondary structure									.	.	.	.			S															T	.	T									G	G	G											S						S	S		S	S	S			.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.																			.																																					.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10					.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.								.	.	.	.	.	70	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	K	N	P	D	L	I	I	G	V	G	G	C	V	A	S	Q	E	G	E	H	I	R	Q	R	A	H	Y	V	D	I	I	F	G	P	Q	T	L	H	R	L	P	E	M	I	N	S	V	R
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		R	A	.	D	S	G	V	P	I	V	M	L	T	A	K	T	D	T	V	D	V	V	L	G	L	E	S	G	A	D	D	Y	I	M	K	P	F	K	P	K	E	L	V	A	R	V	R	A	R	L
Template Known Secondary structure				.												T	T		S	S								T	T								S
Template Predicted Secondary structure				.
Template SS confidence
		72	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions