 |
Job Description | P75919 | Confidence | 6.47% | Date | Thu Jan 5 12:16:03 GMT 2012 |
Rank | 92 | Aligned Residues | 85 |
% Identity | 12% | Template | c3h75A_ |
PDB info |
PDB header:sugar binding protein | Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; |
PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens
|
Resolution | 1.60 Å |
|
 |
  |   |
21 | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | F | P | L | E | K | S | L | D | A | F | A | A | R | Y | R | L | A | E | M | A | E | H | T | L | D | V | Q | Y | Y | I | W | Q | D | D | M | S | G | R | L | L | F | S | A | L | L | A | A | A | K | R | G | V | R | V | R | L | L | L | D | D | N | N | T | P | G | L | D | D | I | L | R | L | L | D | S | H | P | R | I |
Query Conservation |   |
  |   |   |
|   |   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |
|   |   |
|   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |   |
|
|   |
|
|
|   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |   |   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |
|
|   |   |
|
|   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |
|
|
|   |   | . |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
Template Sequence |   |
L | N | P | G | N | S | T | E | T | F | W | V | S | Y | S | Q | F | X | Q | A | A | A | R | D | L | G | L | D | L | R | I | L | Y | A | E | R | D | P | Q | N | T | L | Q | Q | A | R | E | L | F | Q | G | R | D | K | P | D | Y | L | X | L | . |
V | N | E | Q | Y | V | A | P | Q | I | L | R | L | S | Q | G | S | G | I |
Template Known Secondary structure |   |
 |  |
| S |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  | S | S | S |
|
| S |  |  |  |  | . |  |
|
| S | S |  |  |  |  |  |  |  |  |  | T | T | S |
|
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
57 | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . |
  |
  |   |
101 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
Query Sequence |   |
E | V | R | L | F | N |
Query Conservation |   |
|
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |
|
Template Sequence |   |
K | L | F | I | V | N |
Template Known Secondary structure |   |
 |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
  |   |
136 | . | . | . | 140 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|