Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	Y	P	V	D	V	Y	T	G	K	I	Q	A	Y	P	E	G	K	P	S	A	I	A	K	I	Q	V	D	G	E	L	M	L	T	E	L	G	L	E	G	D	E	Q	A	E	K	K	V	H	G	G	P	D	R	A	L	C	H	Y
Secondary structure
SS confidence
Disorder		?	?	?	?										?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	R	E	H	Y	L	Y	W	A	R	E	F	P	E	Q	A	E	L	F	V	A	P	A	F	G	E	N	L	S	T	D	G	L	T	E	S	N	V	Y	M	G	D	I	F	R	W	G	E	A	L	I	Q	V	S	Q	P	R	S	P	C
Secondary structure
SS confidence
Disorder																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	K	L	N	Y	H	F	D	I	S	D	I	A	Q	L	M	Q	N	T	G	K	V	G	W	L	Y	S	V	I	A	P	G	K	V	S	A	D	A	P	L	E	L	V	S	R	V	S	D	V	T	V	Q	E	A	A	A	I	A	W	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence		M	P	F	D	D	D	Q	Y	H	R	L	L	S	A	A	G	L	S	K	S	W	T	R	T	M	Q	K	R	R	L	S	G	K	I	E	D	F	S	R	R	L	W	G	K
Secondary structure
SS confidence
Disorder				?																													?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1o65 chain A Region: 11 - 224 Aligned: 211 Modelled: 214 Confidence: 100.0% Identity: 95% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: MOSC (MOCO sulphurase C-terminal) domain Phyre2 PDB 1oru chain A Region: 9 - 164 Aligned: 153 Modelled: 156 Confidence: 100.0% Identity: 20% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: MOSC (MOCO sulphurase C-terminal) domain Phyre2 PDB 2q8i chain B Region: 79 - 164 Aligned: 71 Modelled: 71 Confidence: 44.3% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of PDBTitle: pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug2 radicicol Phyre2 PDB 1jvw chain A Region: 142 - 162 Aligned: 21 Modelled: 21 Confidence: 42.1% Identity: 33% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1q6h chain A Region: 142 - 162 Aligned: 21 Modelled: 21 Confidence: 33.7% Identity: 24% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2vcd chain A Region: 142 - 162 Aligned: 21 Modelled: 21 Confidence: 32.0% Identity: 33% PDB header:isomerase Chain: A: PDB Molecule:outer membrane protein mip; PDBTitle: solution structure of the fkbp-domain of legionella2 pneumophila mip in complex with rapamycin Phyre2 PDB 1fd9 chain A Region: 142 - 162 Aligned: 21 Modelled: 21 Confidence: 28.7% Identity: 33% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1vje chain A Region: 111 - 149 Aligned: 39 Modelled: 39 Confidence: 26.9% Identity: 15% Fold: LuxS/MPP-like metallohydrolase Superfamily: LuxS/MPP-like metallohydrolase Family: Autoinducer-2 production protein LuxS Phyre2 PDB 1q6u chain A Region: 142 - 162 Aligned: 21 Modelled: 21 Confidence: 25.7% Identity: 24% PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli Phyre2 PDB 1j98 chain A Region: 111 - 149 Aligned: 39 Modelled: 39 Confidence: 25.1% Identity: 18% Fold: LuxS/MPP-like metallohydrolase Superfamily: LuxS/MPP-like metallohydrolase Family: Autoinducer-2 production protein LuxS Phyre2 PDB 2qam chain N domain 1 Region: 139 - 167 Aligned: 28 Modelled: 29 Confidence: 24.7% Identity: 29% Fold: Prokaryotic ribosomal protein L17 Superfamily: Prokaryotic ribosomal protein L17 Family: Prokaryotic ribosomal protein L17 Phyre2 PDB 2ke0 chain A Region: 139 - 162 Aligned: 24 Modelled: 24 Confidence: 24.6% Identity: 25% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei Phyre2 PDB 2vn1 chain A Region: 139 - 162 Aligned: 24 Modelled: 24 Confidence: 20.6% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 Phyre2 PDB 1gd8 chain A Region: 139 - 158 Aligned: 20 Modelled: 20 Confidence: 17.6% Identity: 10% Fold: Prokaryotic ribosomal protein L17 Superfamily: Prokaryotic ribosomal protein L17 Family: Prokaryotic ribosomal protein L17 Phyre2 PDB 2gpr chain A Region: 98 - 164 Aligned: 60 Modelled: 67 Confidence: 17.4% Identity: 15% Fold: Barrel-sandwich hybrid Superfamily: Duplicated hybrid motif Family: Glucose permease-like Phyre2 PDB 2lgo chain A Region: 142 - 162 Aligned: 21 Modelled: 21 Confidence: 17.0% Identity: 29% PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a Phyre2 PDB 2p39 chain A Region: 138 - 155 Aligned: 18 Modelled: 18 Confidence: 16.0% Identity: 17% PDB header:signaling protein Chain: A: PDB Molecule:fibroblast growth factor 23; PDBTitle: crystal structure of human fgf23 Phyre2 PDB 1auy chain A Region: 87 - 120 Aligned: 34 Modelled: 34 Confidence: 15.4% Identity: 24% Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily: Positive stranded ssRNA viruses Family: Tymoviridae-like VP Phyre2 PDB 1ddl chain A Region: 87 - 120 Aligned: 34 Modelled: 34 Confidence: 15.4% Identity: 18% Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily: Positive stranded ssRNA viruses Family: Tymoviridae-like VP Phyre2 PDB 2f4e chain B Region: 142 - 162 Aligned: 21 Modelled: 21 Confidence: 14.6% Identity: 29% PDB header:signaling protein Chain: B: PDB Molecule:atfkbp42; PDBTitle: n-terminal domain of fkbp42 from arabidopsis thaliana Phyre2 1 d1o65a_ 2 d1orua_ 3 c2q8iB_ 4 d1jvwa_ 5 d1q6ha_ 6 c2vcdA_ 7 d1fd9a_ 8 d1vjea_ 9 c1q6uA_ 10 d1j98a_ 11 d2qamn1 12 c2ke0A_ 13 c2vn1A_ 14 d1gd8a_ 15 d2gpra_ 16 c2lgoA_ 17 c2p39A_ 18 d1auya_ 19 d1ddla_ 20 c2f4eB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1o65a_ 100.0 95 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:MOSC (MOCO sulphurase C-terminal) domain 2 d1orua_ 100.0 20 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:MOSC (MOCO sulphurase C-terminal) domain 3 c2q8iB_ 44.3 15 PDB header:transferase Chain: B: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of PDBTitle: pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug2 radicicol 4 d1jvwa_ 42.1 33 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 5 d1q6ha_ 33.7 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 6 c2vcdA_ 32.0 33 PDB header:isomerase Chain: A: PDB Molecule:outer membrane protein mip; PDBTitle: solution structure of the fkbp-domain of legionella2 pneumophila mip in complex with rapamycin 7 d1fd9a_ 28.7 33 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 8 d1vjea_ 26.9 15 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 9 c1q6uA_ 25.7 24 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli 10 d1j98a_ 25.1 18 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 11 d2qamn1 24.7 29 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 12 c2ke0A_ 24.6 25 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei 13 c2vn1A_ 20.6 17 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 14 d1gd8a_ 17.6 10 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 15 d2gpra_ 17.4 15 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 16 c2lgoA_ 17.0 29 PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a 17 c2p39A_ 16.0 17 PDB header:signaling protein Chain: A: PDB Molecule:fibroblast growth factor 23; PDBTitle: crystal structure of human fgf23 18 d1auya_ 15.4 24 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tymoviridae-like VP 19 d1ddla_ 15.4 18 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tymoviridae-like VP 20 c2f4eB_ 14.6 29 PDB header:signaling protein Chain: B: PDB Molecule:atfkbp42; PDBTitle: n-terminal domain of fkbp42 from arabidopsis thaliana 21 c3b7xA_ not modelled 14.3 42 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 6; PDBTitle: crystal structure of human fk506-binding protein 6 22 c2dneA_ not modelled 14.0 12 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: solution structure of rsgi ruh-058, a lipoyl domain of2 human 2-oxoacid dehydrogenase 23 d1zunb1 not modelled 13.3 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 24 c1q1cA_ not modelled 13.1 14 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of n(1-260) of human fkbp52 25 d1q1ca1 not modelled 13.0 14 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 26 d2f9ha1 not modelled 13.0 15 Fold:PTSIIA/GutA-like Superfamily:PTSIIA/GutA-like Family:PTSIIA/GutA-like 27 c2qj8B_ not modelled 12.8 12 PDB header:hydrolase Chain: B: PDB Molecule:mlr6093 protein; PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution 28 d1auyb_ not modelled 12.7 24 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tymoviridae-like VP 29 c2dncA_ not modelled 12.5 12 PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase protein x component; PDBTitle: solution structure of rsgi ruh-054, a lipoyl domain from2 human 2-oxoacid dehydrogenase 30 c3oe2A_ not modelled 12.4 38 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: 1.6 a crystal structure of peptidyl-prolyl cis-trans isomerase ppiase2 from pseudomonas syringae pv. tomato str. dc3000 (pspto dc3000) 31 d2ppna1 not modelled 12.2 20 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 32 c3poaA_ not modelled 11.7 33 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 33 d2cqma1 not modelled 11.0 8 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 34 d1y8ob1 not modelled 11.0 16 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 35 c3o4aC_ not modelled 10.2 20 PDB header:de novo protein Chain: C: PDB Molecule:de novo designed beta-trefoil architecture with symmetric PDBTitle: crystal structure of symfoil-2: de novo designed beta-trefoil2 architecture with symmetric primary structure 36 d1kt0a3 not modelled 10.0 21 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 37 d2pnrc1 not modelled 9.8 16 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 38 c2kklA_ not modelled 9.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 39 c2p23A_ not modelled 9.4 22 PDB header:signaling protein Chain: A: PDB Molecule:fibroblast growth factor 19; PDBTitle: crystal structure of human fgf19 40 d2qn6a1 not modelled 9.3 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 41 d1r9ha_ not modelled 9.2 19 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 42 d1e57a_ not modelled 9.1 24 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tymoviridae-like VP 43 c3sf4F_ not modelled 9.0 47 PDB header:signaling protein/protein binding Chain: F: PDB Molecule:protein inscuteable homolog; PDBTitle: crystal structure of the complex between the conserved cell polarity2 proteins inscuteable and lgn 44 d1s0ua1 not modelled 9.0 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 45 c3jxvA_ not modelled 8.7 8 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidyl-prolyl isomerase; PDBTitle: crystal structure of the 3 fkbp domains of wheat fkbp73 46 c2lezA_ not modelled 8.6 25 PDB header:signaling protein Chain: A: PDB Molecule:secreted effector protein pipb2; PDBTitle: solution nmr structure of n-terminal domain of salmonella effector2 protein pipb2. northeast structural genomics consortium (nesg) target3 stt318a 47 d1u79a_ not modelled 8.5 14 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 48 d1ne3a_ not modelled 7.8 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 49 c2vriA_ not modelled 7.8 11 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: structure of the nsp3 x-domain of human coronavirus nl63 50 c3bboP_ not modelled 7.6 11 PDB header:ribosome Chain: P: PDB Molecule:ribosomal protein l17; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 51 c3ogfA_ not modelled 7.2 21 PDB header:de novo protein Chain: A: PDB Molecule:de novo designed dimeric trefoil-fold sub-domain which PDBTitle: crystal structure of difoil-4p homo-trimer: de novo designed dimeric2 trefoil-fold sub-domain which forms homo-trimer assembly 52 c3rrrM_ not modelled 7.1 50 PDB header:viral protein Chain: M: PDB Molecule:fusion glycoprotein f0; PDBTitle: structure of the rsv f protein in the post-fusion conformation 53 d2zjrk1 not modelled 7.0 11 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 54 d2r48a1 not modelled 7.0 18 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 55 d1r5ba1 not modelled 6.8 13 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 56 c3o5dB_ not modelled 6.8 24 PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: crystal structure of a fragment of fkbp51 comprising the fk1 and fk22 domains 57 d1q1ua_ not modelled 6.6 13 Fold:beta-Trefoil Superfamily:Cytokine Family:Fibroblast growth factors (FGF) 58 d2r4qa1 not modelled 6.5 9 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 59 d1efca1 not modelled 6.4 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 60 d1c9ha_ not modelled 6.4 25 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 61 d1qqka_ not modelled 6.4 27 Fold:beta-Trefoil Superfamily:Cytokine Family:Fibroblast growth factors (FGF) 62 c2xzm1_ not modelled 6.3 31 PDB header:ribosome Chain: 1: PDB Molecule:ribosomal protein s28e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 63 c2gezE_ not modelled 6.2 22 PDB header:hydrolase Chain: E: PDB Molecule:l-asparaginase alpha subunit; PDBTitle: crystal structure of potassium-independent plant asparaginase 64 d1g7sa1 not modelled 6.2 27 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 65 c3ol0C_ not modelled 6.2 21 PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly 66 d1a1qa_ not modelled 6.1 26 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 67 c2ejyA_ not modelled 6.0 10 PDB header:membrane protein Chain: A: PDB Molecule:55 kda erythrocyte membrane protein; PDBTitle: solution structure of the p55 pdz t85c domain complexed2 with the glycophorin c f127c peptide 68 d1ghja_ not modelled 5.8 18 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 69 d1blaa_ not modelled 5.7 27 Fold:beta-Trefoil Superfamily:Cytokine Family:Fibroblast growth factors (FGF) 70 c3hbwA_ not modelled 5.7 20 PDB header:hormone Chain: A: PDB Molecule:fibroblast growth factor 13; PDBTitle: crystal structure of human fibroblast growth factor2 homologous factor 2a (fhf2a), also referred to as3 fibroblast growth factor 13a (fgf13a) 71 d1bara_ not modelled 5.7 20 Fold:beta-Trefoil Superfamily:Cytokine Family:Fibroblast growth factors (FGF) 72 d1yata_ not modelled 5.5 14 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 73 c1rouA_ not modelled 5.5 19 PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures 74 c2o7pA_ not modelled 5.4 19 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain 75 d1liua1 not modelled 5.4 25 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 76 d1kk1a1 not modelled 5.3 24 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 77 c3gqsB_ not modelled 5.3 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 78 c1b34B_ not modelled 5.3 23 PDB header:rna binding protein Chain: B: PDB Molecule:protein (small nuclear ribonucleoprotein sm d2); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain 79 d1b34b_ not modelled 5.3 23 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 80 d1igna2 not modelled 5.1 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of rap1 81 d1jnya1 not modelled 5.0 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0