Job Description P0AAT4 Confidence 100.00% Date Thu Jan 5 11:13:46 GMT 2012 Rank 1 Aligned Residues 244 % Identity 18% Template c2vv5D_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs Resolution 3.45 Å

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		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		T	C	A	Q	L	W	I	M	M	Y	A	L	L	S	V	F	S	L	L	D	V	I	L	N	L	A	Q	K	F	P	A	A	S	Q	L	P	L	K	G	I	F	Q	G	I	K	L	I	G	A	I	L	V	G	I	L	M	I	S	L	L	I	G	Q	S	P	A	I	L	I	S	G	L	G	A	M	A	A	V	L	M
Query Conservation
Alig confidence																																																													.
Template Conservation																																																													.
Template Sequence		N	I	V	A	A	L	A	I	I	I	V	G	L	I	I	A	R	M	I	S	N	A	V	N	R	L	M	I	S	R	K	I	D	A	T	V	A	D	F	L	S	A	L	V	R	Y	G	I	I	A	F	T	L	I	A	A	L	G	R	.	V	G	V	Q	T	A	S	V	I	A	V	L	G	A	A	G	L	V	V	G
Template Known Secondary structure																																	S																											T	.	T	T			S	T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	F	K	D	P	I	L	G	L	V	A	G	I	Q	L	S	A	N	D	M	L	K	L	G	D	W	L	E	M	P	K	Y	G	A	D	G	A	V	I	D	I	G	L	T	T	V	K	V	R	N	W	D	N	T	I	T	T	I	P	T	W	S	L	V	S	D	S	F	K	N	W	S	G	M	S	A	S	G	G
Query Conservation
Alig confidence																																.	.																																														.	.	.
Template Conservation																																.	.																																														.	.	.
Template Sequence		L	A	L	Q	G	S	L	S	N	L	A	A	G	V	L	L	V	M	F	R	P	F	R	A	G	E	Y	V	D	L	.	.	G	G	V	A	G	T	V	L	S	V	Q	I	F	S	T	T	M	R	T	A	D	G	K	I	I	V	I	P	N	G	K	I	I	A	G	N	I	I	N	F	S	R	E	P	V	.	.	.
Template Known Secondary structure					T														T	T		S	S		T	T					S	.	.	S	S										S	S							T	T	S												T	S					S	S	S	S	S		.	.	.
Template Predicted Secondary structure																																.	.																																														.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	I	K	R	S	I	S	I	D	V	T	S	I	R	F	L	D	E	D	E	M	Q	R	L	N	K	A	H	L	L	K	P	Y	L	T	S	R	H	Q	E	I	N	E	W	N	R	Q	Q	G	S	T	E	S	V	L	N	L	R	R	M	T	N	I	G	T	F	R	A	Y	L	N	E	Y	L	R	N	H	P	R
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	N	E	F	I	I	G	V	A	Y	D	S	D	I	D	Q	V	K	Q	I	L	T	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	S	E	D	R
Template Known Secondary structure												T	T	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																																																		.	210	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	K	D	M	T	L	M	V	R	Q	L	A	P	G	D	N	G	L	P	L	E	I	Y	A	F	T	N	T	V	V	W	L	E	Y	E	S	I	Q	A	D	I	F	D	H	I	F	A	I	V	E	E	F	G	L	R	L	H	Q	S	P	T	G
Query Conservation
Alig confidence																													.	.	.																											.
Template Conservation																													.	.	.																											.
Template Sequence		I	L	K	D	R	E	M	T	V	R	L	N	E	L	G	A	S	S	I	N	F	V	V	R	V	W	S	.	.	.	N	S	G	D	L	Q	N	V	Y	W	D	V	L	E	R	I	K	R	E	F	D	A	A	G	I	S	.	F	P	Y	P	Q	M
Template Known Secondary structure		B		T	T	S											S	S	S										.	.	.		T	T	T																				T			.
Template Predicted Secondary structure																													.	.	.																											.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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