Return to main results Retrieve Phyre Job Id

Job DescriptionP76553
Confidence80.21%DateThu Jan 5 12:24:31 GMT 2012
Rank106Aligned Residues92
% Identity14%Templatec3q41B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd)
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  VSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLTVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGG
Query Conservation 
  
   
   
    




      
    
   
    
    
  
   

   
            
 






Alig confidence 






















































..




















..
Template Conservation    
         
  



             
       
  
           ..
    
  
      


   ..
Template Sequence  SSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDPGTK. . NVTALLMEARELEARVIILSA. .
Template Known Secondary structure  B



SSTTSS


TT
S..

TSS



..
Template Predicted Secondary structure 

















..




..
Template SS confidence 















































































   148.150.........160.........170.........180.........190.........200.. .......210.........220...
 
   117..120.........130..
Predicted Secondary structure 


Query SS confidence 















Query Sequence  SVLDAAKAVTLLVTNP
Query Conservation 
  
 

 

      
Alig confidence 















Template Conservation         
   
   
Template Sequence  SEDDAATVYRAAAMLN
Template Known Secondary structure 
TTT
Template Predicted Secondary structure 


Template SS confidence 















   224.....230.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions