 |
Job Description | P76553 | Confidence | 38.41% | Date | Thu Jan 5 12:24:31 GMT 2012 |
Rank | 273 | Aligned Residues | 72 |
% Identity | 14% | Template | c3pdiB_ |
PDB info |
PDB header:protein binding | Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; |
PDBTitle: precursor bound nifen
|
Resolution | 2.40 Å |
|
 |
  |   |
36 | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 100 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | V | S | S | C | G | Q | Q | A | Q | T | R | G | L | K | H | L | F | V | M | A | D | S | F | L | H | Q | A | G | M | T | A | G | L | T | R | S | L | T | V | K | G | I | A | M | T | L | W | P | C | P | V | G | E | P | C | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | T | D | V | C | A | A | V | A | Q | L | R | E | S |
Query Conservation |   |
  |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|
| . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|   |
|   |   |   |   | . | . | . | . | . |   |   |   |   |   |
|   |   |   |
|   |
|
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |
Template Sequence |   |
L | Q | D | A | M | L | D | T | H | F | M | L | S | S | A | R | T | A | I | A | A | D | P | . |
. |
. |
. |
. |
D | L | L | L | G | F | D | A | L | L | R | S | M | G | A | H | T | V | A | A | V | V | P | A | R | A | A | A | L | V | D | S | P | L | P | S | V | R | V | G | D | L | E | D | L | E | H | A | A | R | A | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
|  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |  |  | S | S |
|
| S |
|
| T | T | T | T | S | S |
|  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . |
  |
  |   |
106 | . | . | . | 110 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
G | C | D | G | V | I | A |
Query Conservation |   |
  |   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|
Template Sequence |   |
Q | A | Q | L | V | I | G |
Template Known Secondary structure |   |
T |
| S |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
375 | . | . | . | . | 380 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|