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Job DescriptionP76553
Confidence100.00%DateThu Jan 5 12:24:31 GMT 2012
Rank16Aligned Residues333
% Identity14%Templatec3okfA_
PDB info PDB header:lyaseChain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21....... .30.........40.........50.........60.........70.........80 .........90...
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Query Sequence  VKTFSVPP. . . . . VTLCGPGSVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLTVKGIAM. . TLWPCPVGEPCIT
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Template Sequence  MERITVNLGERSYPISIGAGLFANPALLSLSAK. QKVVIVTNHTVAPL. YAPAIISLLDHIGCQHALLELPDGEQYKTLE
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GGG
TTGGG
GGGG


TT.
TTT.T

SSGGG
B
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   6...10.........20.........30........ .40.........50.. .......60.........70.........80...
 
   94.....100....... ..110.........120.........130.........140.........150....... ..160........
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Query Sequence  DVCAAVAQLRESGC. . . DGVIAFGGGSVLDAAKAVTLLVTNPDSTLAEMSETSVLQPRLPLIAIPTT. . AGTGSETTNVT
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Template Sequence  TFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACY. . . . . . . . . . . . . . . . QRGVDFIQIPTTLLSQVDSSVGGKT
Template Known Secondary structure  TT

TT
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   84.....90.........100.........110.........120.. .......130.........140.......
 
   169170.........180.........190.........200.........210.........220.........230.........240........
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Query Sequence  VIIDAVSGRKQVLAHASLMPDVAILDAALTEGVPSHVTAMTGIDALTHAIEAYSALNATPFTDSLAIGAIAMIGKSLPKA
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Template Sequence  AVNHPLGKNMIGAFYQ. . . PKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAF. . FDWLEAQMEALYALDEQALTYA
Template Known Secondary structure  TT

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SGGGGGGS
T
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   148.150.........160... ......170.........180.........190.........200 .........210.........220..
 
   249250.........260.........270.........280.........290.........300.........310.........320........
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Query Sequence  VGYGHDLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGAALHIPHGLANAMLLPTVMEFNRMVCRERFSQIGRALRTK
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Template Sequence  IA. . RCCQIKAEVVAQDEKGIRALLNLGHTFGHAIEA. HMGYGNWLHGEAVSAGTVMAAKTAQLQG. . . . . . . . . . . . . .
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GGGGGGTT.
TTTS
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   223. .....230.........240.........250....... ..260.........270.........280.....
 
   329330.........340.........350.........360.........370........ .380.........390.....
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Query Sequence  KSDDRDAINAVSELIAEVGIGKRLGDVGATSAHYGAWAQAALEDICLRSN. . . . . . . . . . . . PRTASLEQIVGLYAAAQ
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Template Sequence  . LIDASQFERILAILKKAHLPVRTPE. NMTFADFMQHMMRDKKVLAGELRLVLPTSIGTSAVVKGVPEAVIAQAIEYCR
Template Known Secondary structure  .SS
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T.T

TGGGT

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   288.290.........300.........310.. .......320.........330.........340.........350.........360....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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