Job Description P76553 Confidence 85.07% Date Thu Jan 5 12:24:31 GMT 2012 Rank 85 Aligned Residues 75 % Identity 23% Template c3nhzA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence		L	K	H	L	F	V	M	A	D	S	F	L	H	Q	A	G	M	T	A	G	L	T	R	S	L	T	V	K	G	I	A	M	T	L	W	P	C	P	V	G	E	P	C	I	T	D	V	C	A	A	V	A	Q	L	R	E	S	G	C	D	G	V	I	A	.	.	.	F	G	G	G	S	V	L	D	A	A	K	A	V
Query Conservation																																																																		.	.	.
Alig confidence														.	.	.	.																					.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation														.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Sequence		R	Q	R	I	L	V	V	D	D	D	A	S	.	.	.	.	L	A	E	M	L	T	I	V	L	R	G	E	G	F	D	T	A	V	I	G	.	.	.	.	.	.	.	.	.	D	G	T	Q	A	L	T	A	V	R	E	L	R	P	D	L	V	L	L	D	L	M	L	P	G	M	N	G	I	D	V	C	R	V	L
Template Known Secondary structure										S				.	.	.	.												T	T								.	.	.	.	.	.	.	.	.		G	G	G											S						S	S		S	S	S
Template Predicted Secondary structure														.	.	.	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.					.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.										.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	V	T	N	P	D	S	T	L	A	E	M	S	E	T	S	V	L	Q	P	R	L	P	L	I	A	I
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	G	V	P	I	V	M	L
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		72	.																			.	.	.	.	.	.	80	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions