|   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  |  |  | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | L | Q | R | V | K | T | F | S | V | P | P | V | T | L | C | G | P | G | S | V | S | S | . |
C | G | Q | Q | A | Q | T | R | G | L | K | H | L | F | V | M | A | D | S | F | L | H | Q | A | G | M | T | A | G | L | T | R | S | L | T | V | K | G | I | A | M | T | L | W | P | C | P | V | G | E | P | C | I | T | D | V |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |
|   |
|   |
|   |   | . |
|   |   |   |
|   |   |   |
|   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |   |   |   |
|   |   |
|   |
|
|   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|   |   | . | . |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   | . | . | . | . |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|
Template Sequence |   |
N | S | L | A | F | N | H | D | T | L | P | Q | K | V | X | F | G | Y | G | K | S | S | A | F | L | K | Q | E | V | E | R | R | G | S | A | K | V | X | V | I | A | G | E | . |
. |
R | E | X | S | I | A | H | K | V | A | S | E | I | E | V | A | . |
. |
. |
. |
I | W | H | D | E | V | V | X | H | V | P | I | E | V | A |
Template Known Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  | T |
| S | S |  |  |  |  |
|
| T | . | . | T | T |  |  |  |  |  |  |  | G | G | G | S |
|
| S | . | . | . | . |  |  |  |
|
|
|
| T | T |
| B |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|  |  |
|  |  |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | |
|
. | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | |
|
|
|
. | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . |
  |
  |   |
96 | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | A | A | V | A | Q | L | R | E | S | G | C | D | G | V | I | A | F | G | G | G | S | V | L | D | A | A | K | A | V | T | L | L | V | T | N | P | D | S | T | L | A | E | M | S | E | T | S | V | L | Q | P | R | L | P | L | I | A | I | P | T | T | A | G | T | G | S | E | T | T | N | V | T | V | I | I | D | A | V | S |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |
|   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|
|   |
|
|
|
|
|   |
|   |   |
|
|
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |
|
|   |
|
|   |
|
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |
|   |
|
|
|
|
|   | . |   |   |   |   |
|   |   |   |   |   |   |   | . | . |   |
Template Sequence |   |
E | R | A | R | A | V | A | T | D | N | E | I | D | L | L | V | C | V | G | G | G | S | T | I | G | L | A | K | A | I | A | X | T | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | L | P | I | V | A | I | P | T | T | Y | A | . |
G | S | E | A | T | N | V | W | G | L | T | E | . |
. |
A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |
| S | S |
| . |
| G | G | G |
|
|  |  |  |  |  |  | . | . | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |
|
|
|
|
| . |
|
|
|
|
|
|  |  |  |  |  |
| . | . |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 120 | . | . | |
. | . | . | . | . | . | . | 130 | . | . | . | . | |
|
. |
  |
  |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|  |  |  |
|
|
|  |  |  |  |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | R | K | Q | V | L | A | H | A | S | L | M | P | D | V | A | I | L | D | A | A | L | T | E | G | V | P | S | H | V | T | A | M | T | G | I | D | A | L | T | H | A | I | E | A | Y | S | A | L | N | A | T | P | F | T | D | S | L | A | I | G | A | I | A | M | I | G | K | S | L | P | K | A | V | G | Y | G | H | D | L |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|   |
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |
|
|
|   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |
|
|   |   |
|
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | R | K | T | T | G | V | D | L | K | V | L | P | E | T | V | I | Y | D | S | E | L | T | X | S | L | P | V | E | X | S | V | A | S | G | L | N | G | L | A | H | C | I | D | S | L | W | G | P | N | A | D | P | I | N | A | V | L | A | A | E | G | I | R | A | L | N | Q | G | L | P | K | I | V | A | N | P | H | S | I |
Template Known Secondary structure |   |
T |  |  |  |  |  |  |
| G | G | G | S |
| S |  |  |  |  |
| G | G | G | G | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
136 | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . |
  |
  |   |
256 | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | R | E | S | M | L | L | A | S | C | M | A | G | M | A | F | S | S | A | G | L | G | L | C | H | A | M | A | H | Q | P | G | A | A | L | H | I | P | H | G | L | A | N | A | M | L | L | P | T | V | M | E | F | N | R | M | V | C | R | E | R | F | S | Q | I | G | R | A | L | R | T | K | K | S | D | D | R | D | A |
Query Conservation |   |
|
|
|   |   |
|   |   |
|
|   |
|
|
|   |
|   |   |   |   |
|   |   |   |   |
|
|
|   |   |   |
|   |   |   |   |   |
|   |
|
|   |   |   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
Template Conservation |   |
  |
|   |   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |
Template Sequence |   |
E | G | R | D | E | A | L | Y | G | A | Y | L | A | A | V | S | F | A | S | A | G | S | G | L | H | H | K | I | C | H | T | L | G | G | T | F | N | L | P | H | A | Q | T | H | A | T | V | L | P | Y | V | L | A | F | N | A | G | D | A | P | E | A | E | R | R | A | A | A | A | F | G | T | D | T | . |
. |
. |
. |
. |
A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  |  |  | T | S | S | S | . | . | . | . | . |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  | . | . | . | . | . |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
216 | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
290 |
  |
  |   |
336 | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | N | A | V | S | E | L | I | A | E | V | G | I | G | K | R | L | G | D | V | G | A | T | S | A | H | Y | G | A | W | A | Q | A | A | L | E | D | I | C | L | R | S | N | P | R | T | A | S | L | E | Q | I | V | G | L | Y | A | A | A |
Query Conservation |   |
  |   |   |
|   |   |
|   |   |   |
|
|
|
|   |   |
|   |
|   |
|
|   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |
|
|
|
|   |   |
|   |   |   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |
|   |   |
|
|   |
|   |
|   |   |
|
|   |   |
|
Template Sequence |   |
L | E | G | L | Q | R | L | R | L | S | V | N | A | P | K | R | L | S | D | Y | G | F | E | A | S | G | I | A | E | A | V | D | V | T | L | E | K | . |
V | P | A | N | N | P | R | P | V | T | R | E | N | L | S | R | L | L | E | A | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T |
|
|
|
| G | G | G | G | T |
|
| G | G | G |  |  |  |  |  |  |  |  |  | T | T | . | S |
| T | T |
| S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
291 | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | |
. | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . |
  |