 |
Job Description | P76553 | Confidence | 80.15% | Date | Thu Jan 5 12:24:31 GMT 2012 |
Rank | 108 | Aligned Residues | 80 |
% Identity | 10% | Template | c3grcD_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:sensor protein, kinase; |
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
|
Resolution | 2.21 Å |
|
 |
  |   |
49 | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | |
|
|
. | . | . | . | . | . | . | 120 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . |  |
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | K | H | L | F | V | M | A | D | S | F | L | H | Q | A | G | M | T | A | G | L | T | R | S | L | T | V | K | G | I | A | M | T | L | W | P | C | P | V | G | E | P | C | I | T | D | V | C | A | A | V | A | Q | L | R | E | S | G | C | D | G | V | I | A | . |
. |
. |
F | G | G | G | S | V | L | D | A | A | K | A | V |
Query Conservation |   |
  |   |   |   |
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
| . | . | . |
|
|
|
|
|   |   |
|   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
|
|
|   |   |   | . | . | . | . |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
Template Sequence |   |
R | P | R | I | L | I | C | E | D | D | P | D | . |
. |
. |
. |
I | A | R | L | L | N | L | X | L | E | K | G | G | F | D | S | D | X | V | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
S | A | A | Q | A | L | E | Q | V | A | R | R | P | Y | A | A | X | T | V | D | L | N | L | P | D | Q | D | G | V | S | L | I | R | A | L |
Template Known Secondary structure |   |
| S |  |  |  |  |  |
| S | S |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  | S | . | . | . | . | . | . | . | . | . | S |  |  |  |  |  |  |  |  | T | T | S |
|
| S |  |  |  |  |
| S | S |
| S | S | S |
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
547 | . | . | 550 | . | . | . | . | . | . | . | . | |
|
|
|
. | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . |
  |
  |   |
126 | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | L | L | V | T | N | P | D | S | T | L | A | E | M | S | E | T | S | V | L | Q | P | R | L | P | L | I | A | I | P | T |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |
|   |   |
Template Sequence |   |
R | R | D | S | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | R | D | L | A | I | V | V | V | S | A |
Template Known Secondary structure |   |
 |  | S | T | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S | T | T |
|  |  |  |  |  |
| T |
Template Predicted Secondary structure |   |
 |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
614 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 620 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|