Job Description P76553 Confidence 100.00% Date Thu Jan 5 12:24:31 GMT 2012 Rank 19 Aligned Residues 293 % Identity 14% Template c3clhA_ PDB info PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori Resolution 2.40 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	T	L	C	G	P	G	S	V	S	S	C	G	Q	Q	A	Q	T	R	G	L	K	H	L	F	V	M	A	D	S	F	L	H	Q	A	G	M	T	A	G	L	T	R	S	L	T	V	K	G	I	A	M	T	L	W	P	C	P	V	G	E	P	C	I	T	D	V	C	A	A	V	A	Q	L	R	E	S	G	C
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																						.
Template Conservation									.	.	.	.	.	.	.	.																						.
Template Sequence		Y	K	V	F	L	G	E	.	.	.	.	.	.	.	.	L	P	E	I	K	L	K	Q	K	A	L	I	I	S	D	S	I	V	A	G	L	.	H	L	P	Y	L	L	E	R	L	K	A	L	E	V	R	V	C	V	I	E	S	G	E	K	Y	K	N	F	H	S	L	E	R	I	L	N	N	A	F	E	M	Q	L
Template Known Secondary structure			B				S	S	.	.	.	.	.	.	.	.							S	S												T	T	.	T						T	T				S									S	S	G	G	G		S														T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																						.
Template SS confidence
		13	.	.	.	.	.	.									20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
					108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	D	G	V	I	A	F	G	G	G	S	V	L	D	A	A	K	A	V	T	L	L	V	T	N	P	D	S	T	L	A	E	M	S	E	T	S	V	L	Q	P	R	L	P	L	I	A	I	P	T	T	A	G	T	G	S	E	T	T	N	V	T	V	I	I	D	A	V	S	G	R	K	Q	V	L	A	H	A
Query Conservation		.	.	.
Alig confidence		.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Sequence		N	R	H	S	L	M	I	A	L	G	G	G	V	I	S	D	M	V	G	F	A	S	S	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	G	I	D	F	I	N	I	P	T	T	L	L	A	Q	V	D	A	S	V	G	G	K	T	G	I	N	T	P	Y	G	K	N	L	I	G	.	S
Template Known Secondary structure			T	T								S														G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G										S						T	T	S	S	S								T	T							.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	M	P	D	V	A	I	L	D	A	A	L	T	E	G	V	P	S	H	V	T	A	M	T	G	I	D	A	L	T	H	A	I	E	A	Y	S	A	L	N	A	T	P	F	T	D	S	L	A	I	G	A	I	A	M	I	G	K	S	L	P	K	A	V	G	Y	G	H	D	L	A	A	R	E	S	M	L	L	A
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	H	Q	P	K	A	V	Y	M	D	L	A	F	L	K	T	L	E	K	R	E	F	Q	A	G	V	A	E	I	I	K	M	A	V	C	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	L	V	E	R	L	E	T	K	D	L	K	D	C	L	E	E	V	I	F	Q
Template Known Secondary structure						S						T	T	S	G	G	G	S																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S		T	T	T	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		S	C	M	A	G	M	A	F	S	S	A	G	L	G	L	C	H	A	M	A	H	Q	P	G	.	.	.	A	A	L	H	I	P	H	G	L	A	N	A	M	L	L	P	T	V	M	E	F	N	R	M	V	C	R	E	R	F	S	Q	I	G	R	A	L	R	T	K	K	S	D	D	R	D	A	I	N	A	V	S	E
Query Conservation																										.	.	.
Alig confidence																										.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	N	I	K	A	Q	V	V	R	A	G	L	N	Y	G	H	T	F	G	H	A	I	E	K	E	T	D	Y	E	R	F	L	H	G	E	A	I	A	I	G	M	R	M	A	N	D	L	A	L	S	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	T	L	K	E	Y	E	R	I	E	N
Template Known Secondary structure												T	T	T	T	T	T											T	T	T	S	S																						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.																.	260	.	.	.	.	.	.	.	.	.	270
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	E	V	G	I	G	K	R	L	G	D	V	G	A	T	S	A	H	Y	G	A	W	A	Q	A	A	L	E	D	I	C	L	R	S	N	P	R	T	A	S	L	E	Q	I	V	G	L	Y	A	A	A	Q
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	K	K	F	D	L	I	F	H	Y	K	F	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	G	V	G	A	F	E	V	A	S	H	I	P	K	E	T	I	I	K	V	L	E	K	W	H
Template Known Secondary structure						T	T										.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S																	S	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.														.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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