Return to main results Retrieve Phyre Job Id

Job DescriptionP60624
Confidence35.45%DateThu Jan 5 12:06:57 GMT 2012
Rank36Aligned Residues40
% Identity28%Templatec3iz5a_
PDB info PDB header:ribosomeChain: A: PDB Molecule:60s ribosomal protein l1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
Resolution5.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.. .......40
Predicted Secondary structure 















.......


Query SS confidence 































. . . . . . .







Query Sequence  MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSG. . . . . . . KVIVEGIN
Query Conservation 
  





 
 








 
 

 
    ....... 






Alig confidence 































.......







Template Conservation 
 
  








 











  
 

   
  






 
Template Sequence  MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLA
Template Known Secondary structure 

SS




S




SSSS



B
S

SSSSS
S
SS

S

B

S
Template Predicted Secondary structure 

























Template SS confidence 














































   1........10.........20.........30.........40.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions