Job Description P0AEH1 Confidence 99.91% Date Thu Jan 5 11:23:20 GMT 2012 Rank 1 Aligned Residues 187 % Identity 19% Template c3rleA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:golgi reassembly-stacking protein 2; PDBTitle: crystal structure of grasp55 grasp domain (residues 7-208) Resolution 1.65 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		V	V	G	E	I	A	A	N	S	I	A	A	E	A	Q	I	A	P	G	.	T	E	L	K	A	V	D	G	I	E	T	P	D	W	D	A	V	R	L	Q	L	V	D	K	I	G	D	E	S	T	T	I	T	V	A	P	F	G	S	D	Q	R	R	D	V	K	L	D	L	R	H	W	A	F	E	P	D	K	E	D
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		H	V	L	R	V	Q	E	N	S	P	G	H	R	A	G	L	E	P	F	F	D	F	I	V	S	I	N	G	S	R	L	N	K	D	N	D	T	L	K	D	L	L	K	A	N	V	E	K	P	V	K	X	L	I	Y	S	S	K	T	L	E	L	R	E	T	S	V	T	P	S	N	L	W	G	G	Q	G	L	L	G
Template Known Secondary structure								T	T	S					T	T			T	T	T							T	T					S	S	S	S									T	T	T	S									T	T	T												S	S	S	S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.
Predicted Secondary structure																																				.																																					.	.
Query SS confidence																																				.																																					.	.
Query Sequence		P	V	S	S	L	G	I	R	P	R	G	P	Q	I	E	P	V	L	E	N	V	Q	P	N	S	A	A	S	K	A	G	L	Q	A	.	G	D	R	I	V	K	V	D	G	Q	P	L	T	Q	W	V	T	F	V	M	L	V	R	D	N	P	G	K	S	L	A	L	E	I	E	R	.	.	Q	G	S	P	L	S	L
Query Conservation																																				.																																					.	.
Alig confidence																																				.											.																										.	.
Template Conservation																																															.
Template Sequence		V	S	I	R	F	C	S	F	D	G	A	N	E	N	V	W	H	V	L	E	V	E	S	N	S	P	A	A	L	A	G	L	R	P	H	S	D	Y	I	I	G	A	D	T	V	.	X	N	E	S	E	D	L	F	S	L	I	E	T	H	E	A	K	P	L	K	L	Y	V	Y	N	T	D	T	D	N	C	R	E	V
Template Known Secondary structure										T	T	G	G	G	S									T	T	S						T			T	T	T							S	S		.			S	S	S									T	T	T	S									T	T	T	T
Template Predicted Secondary structure																																															.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	I	P	E	S	K	P	G	N	G	K	A	I	G	F	V	G	I	E	P	K	V	I	P	L	P	D	E	Y	K	V	V	R	Q	Y	G	P	F	N	A	I	V	E	A	T	D	K	T	W	Q	L	M	K	L	T	V	S	M	L	G	K	L	I	T	G	D	V	K	L	N	N	L	S	G	P	I	S	I	A
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	T	P	N	S	A	W	G	G	E	G	S	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	S	S	S	S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	A	G	M	T	A	E	L	G	V	V	Y	Y	L	P	F	L	A	L	I	S	V	N	L	G	I	I	N	L	F	P	L	P	V	L	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	G	I	G	Y	G	Y	L	H	R	I	P	T	R	P	F	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	G	G	G				S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																						192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions