 |
Job Description | P0AEH1 | Confidence | 99.15% | Date | Thu Jan 5 11:23:20 GMT 2012 |
Rank | 23 | Aligned Residues | 91 |
% Identity | 99% | Template | c2zplA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:regulator of sigma e protease; |
PDBTitle: crystal structure analysis of pdz domain a
|
Resolution | 1.70 Å |
|
 |
  |   |
128 | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | P | V | V | G | E | I | A | A | N | S | I | A | A | E | A | Q | I | A | P | G | T | E | L | K | A | V | D | G | I | E | T | P | D | W | D | A | V | R | L | Q | L | V | D | K | I | G | D | E | S | T | T | I | T | V | A | P | F | G | S | D | Q | R | R | D | V | K | L | D | L | R | H | W | A | F | E | P | D | K | E |
Query Conservation |   |
  |   |   |
|   |   |
|   |   |   |
|   |
|   |   |
|
|
|   |   |
|
|   |
|   |   |
|
|
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |
|   |   |   |
|
|
|   |   |
|
|
|   |   |
|
|   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
Template Sequence |   |
R | P | V | V | G | E | I | A | A | N | S | I | A | A | E | A | Q | I | A | P | G | T | E | L | K | A | V | D | G | I | E | T | P | D | W | D | A | V | R | L | Q | X | V | D | K | I | G | D | E | S | T | T | I | T | V | A | P | F | G | S | D | Q | R | R | D | V | K | L | D | L | R | H | W | A | F | E | P | D | K | E |
Template Known Secondary structure |   |
|
| B |  |  |  |  |
| T | T | S |  |  |  |  | T | T |
|
| T | T |
|  |  |  |  |  | T | T |  |  |
|
| S |  |  |  |  |  |  |  |  |  | T | T | T | T |
| S |  |  |  |  |  |  |  |
| T | T |
|
|
|
|  |  |  |  |  |  |
| T | T |
|
|
|
| T | T | T | S |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
128 | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . |
  |
  |   |
208 | . | 210 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | P | V | S | S | L | G | I | R | P | R |
Query Conservation |   |
  |   |   |   |   |
|
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|
|
|   |
|   |
Template Sequence |   |
D | P | V | S | S | L | G | I | R | P | R |
Template Known Secondary structure |   |
|  |  |  |  | T | T |  |  |  |
|
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
  |   |
208 | . | 210 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|