Job Description P77515 Confidence 100.00% Date Thu Jan 5 12:30:11 GMT 2012 Rank 2 Aligned Residues 186 % Identity 19% Template c1pdiQ_ PDB info PDB header:structural protein Chain: Q: PDB Molecule:short tail fiber protein; PDBTitle: fitting of the c-terminal part of the short tail fibers2 into the cryo-em reconstruction of t4 baseplate Resolution 12.00 Å

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.									130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																												.																								.	.	.	.	.	.	.	.
Query SS confidence																												.																								.	.	.	.	.	.	.	.
Query Sequence		Y	T	S	A	H	P	P	A	E	F	Y	P	V	G	A	P	I	P	W	P	S	D	T	V	P	S	.	G	Y	A	L	M	Q	G	Q	T	F	D	K	S	A	Y	P	K	L	A	V	A	Y	P	.	.	.	.	.	.	.	.	S	G	V	I	P	D	M	R	G	W	T	I	K	G	K	P	A	S	G	R	A	V
Query Conservation																												.																								.	.	.	.	.	.	.	.
Alig confidence																												.																								.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		V	V	T	Q	N	E	I	D	R	T	I	P	V	G	A	I	M	M	W	A	A	D	S	L	P	S	D	A	W	R	F	C	H	G	G	T	V	S	A	S	D	C	P	L	Y	A	S	R	I	G	T	R	Y	G	G	S	S	S	N	P	G	L	P	D	M	R	G	L	F	V	R	G	S	G	R	.	.	.	.	.
Template Known Secondary structure					G	G	G	G	G	G	T	S		S	S						S	S	S			S	S	T	T				S	S	S					T	T	T		T	T					S	S	S	T	T	S	B		S	S	S	B						S	S						S	S		.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	Q	E	Q	D	G	I	K	S	H	T	H	S	A	S	A	S	S	T	D	L	G	T	E	T	T	S	S	F	D	Y	G	T	K	S	T	N	N	T	G	A	H	T	H	S	I	S	G	T	A	N	S	A	G	A	H	Q	H	K	S	S	G	A	F	G	G	T	N	T	S	I	F	P	N	G	Y	T	A	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	H	L	T	N	P	N	V	N	G	N	D	Q	F	G	K	P	R	L	G	V	G	C	T	G	G	Y	V	G	E	V	Q	I	Q	Q	M	S	Y	H	K	H	A	G	G	F	G	E	H	D	D	L	G	A	F	G	N	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T	S	S			T	T	S				T	T	T	T					S	S	S															S				S	S	S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																								406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	L	S	A	G	I	M	S	T	T	S	G	S	G	Q	T	R	N	A	G	K	T	S	S	D	G	A	H	T	H	S	L	S	G	T	A	A	S	A	G	A	H	A	H	T	V	G	I	G	A	H	T	H	S	V	A	I	G	S	H	G	H	T	I	T	V	N	A	A	G	N	A	E	N	T	V	K	N	I
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	S	N	F	V	G	T	R	K	G	L	D	W	D	N	R	S	Y	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	D	G	Y	E	I	D	P	E	S	Q	R	N	S	K	Y	T	L	N	R	P	E	L	I	G	N	E	T	R	P	W	N	I
Template Known Secondary structure			S	S	S						S				S		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S			S		G	G	G			T	T	S			S	S	T	T			S	S					S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.																											.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	N	Y	I	V	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	N	Y	I	I	K	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		518	.	520	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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