Job Description P46850 Confidence 100.00% Date Thu Jan 5 12:04:22 GMT 2012 Rank 1 Aligned Residues 406 % Identity 29% Template d1uc2a_ SCOP info Hypothetical protein PH1602 Hypothetical protein PH1602 Hypothetical protein PH1602 Resolution 2.15

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		2	.	.	.	.	.	.	.				10	.	.	.	.	.	.	.	.	.					20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.
Predicted Secondary structure										.	.	.											.	.	.	.																																												.	.	.
Query SS confidence										.	.	.											.	.	.	.																																												.	.	.
Query Sequence		N	Y	E	L	L	T	T	E	.	.	.	N	A	P	V	K	M	W	T	K	G	.	.	.	.	V	P	V	E	A	D	A	R	Q	Q	L	I	N	T	A	K	M	P	F	I	F	K	H	I	A	V	M	P	D	V	H	L	G	K	G	S	T	I	G	S	V	I	P	.	.	.	T	K	G	A	I	I	P	A	A
Query Conservation										.	.	.											.	.	.	.																																												.	.	.
Alig confidence										.	.	.											.	.	.	.																																												.	.	.
Template Conservation
Template Sequence		R	W	E	I	P	K	F	D	K	R	M	R	V	P	G	R	V	Y	A	D	E	V	L	L	E	K	M	K	N	D	R	T	L	E	Q	A	T	N	V	A	M	L	P	G	I	Y	K	Y	S	I	V	M	P	D	G	H	Q	G	Y	G	F	P	I	G	G	V	A	A	F	D	V	K	E	G	V	I	S	P	G	G
Template Known Secondary structure									S	T	T		S	S																S	S	S									T	T	S	T	T	B		S												S	S	S										T	T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.																.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	V	D	I	G	C	G	M	N	A	L	R	T	A	L	T	A	E	D	L	P	E	N	L	A	E	L	R	Q	A	I	E	T	A	V	P	H	G	R	T	T	G	R	C	K	R	D	K	G	A	W	E	N	P	P	V	N	V	D	A	K	W	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	Y	D	I	N	C	G	V	R	L	I	R	T	N	L	T	E	K	E	V	R	P	R	I	K	Q	L	V	D	T	L	F	K	N	V	P	S	G	V	G	S	Q	G	R	I	K	L	H	W	T	Q	I	D	D	V	L	V	D	G	A	K	W	A	V	D	N	G	Y	G	W	E	R	D	L	E	R	L	E	E
Template Known Secondary structure		T		S	S	T	T									S		B					G	G	G												S			S	T	T				S	S				T	T	S															T	T	S	S		G	G	G	G	G	G	S	G	G
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.															.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	A	G	Y	Q	W	L	T	Q	K	Y	P	R	F	L	N	T	N	N	Y	K	H	L	G	T	L	G	T	G	N	H	F	I	E	I	C	L	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	Q	V	W	I	M	L	H	S	G	S	R	G	I	G	N	A	I	G	T	Y	F	I	D	L
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	R	M	E	G	A	D	P	E	A	V	S	Q	R	A	K	Q	R	G	A	P	Q	L	G	S	L	G	S	G	N	H	F	L	E	V	Q	V	V	D	K	I	F	D	P	E	V	A	K	A	Y	G	L	F	E	G	Q	V	V	V	M	V	H	T	G	S	R	G	L	G	H	Q	V	A	S	D	Y	L	R	I
Template Known Secondary structure		G	G			T	T			G	G	G	S									G	G	G	S	S				S	T	T												S								T	T			T	T	B
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	K	E	M	Q	E	T	L	E	T	L	P	S	R	D	L	A	Y	F	M	E	G	T	E	Y	F	D	D	Y	L	K	A	V	A	W	A	Q	L	F	A	S	L	N	R	D	A	M	M	E	N	V	V	T	A	L	Q	S	I	T	Q	K	T	V	R	Q	P	Q	T	L	A	M	E	E	I	N	C	H	H	N
Query Conservation
Alig confidence																																																																			.
Template Conservation																																																																			.
Template Sequence		M	E	R	A	I	R	K	Y	R	I	P	W	P	D	R	E	L	V	S	V	P	F	Q	S	E	E	G	Q	R	Y	F	S	A	M	K	A	A	A	N	F	A	W	A	N	R	Q	M	I	T	H	W	V	R	E	S	F	Q	E	V	F	K	Q	D	P	E	.	G	D	L	G	M	D	I	V	Y	D	V	A	H	N
Template Known Secondary structure						G	G	G	S					S	S	T	T						T	T	S																																						S		T	T	.	T	T	T										S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330
		283	.	.	.	.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.	.	.														.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure											.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query SS confidence											.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query Sequence		Y	V	Q	K	E	Q	H	F	G	.	.	.	.	E	E	I	Y	V	T	R	K	G	A	V	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	G	Q	Y	G	I	I	P	G	S	M	G	A	K	S	F	I	V	R	G	L	.	.	G	N	E	E	S	F	C	S	C	S	H	G	A	G	R	V	M
Query Conservation											.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Alig confidence											.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation
Template Sequence		I	G	K	V	E	E	H	E	V	D	G	K	R	V	K	V	I	V	H	R	K	G	A	T	R	A	F	P	P	G	H	E	A	V	P	R	L	Y	R	D	V	G	Q	P	V	L	I	P	G	S	M	G	T	A	S	Y	I	L	A	G	T	E	G	A	M	K	E	T	F	G	S	T	C	H	G	A	G	R	V	L
Template Known Secondary structure											T	T											S							T	T		T	T	S		T	T	T	T	T	T										T	T	S															S	S	S					S			B	S	S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.					.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.			390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.																											.	.
Query SS confidence																						.	.	.	.																											.	.
Query Sequence		S	R	T	K	A	K	K	L	F	S	V	E	D	Q	I	R	A	T	A	H	.	.	.	.	V	E	C	R	K	D	A	E	V	I	D	E	I	P	M	A	Y	K	D	I	D	A	V	M	A	A	.	.	Q	S	D	L	V	E	V	I	Y	T	L	R	Q	V	V	C	V	K	G
Query Conservation																						.	.	.	.																											.	.
Alig confidence																						.	.	.	.																											.	.
Template Conservation
Template Sequence		S	R	K	A	A	T	R	Q	Y	R	G	D	R	I	R	Q	E	L	L	N	R	G	I	Y	V	R	A	A	S	M	R	V	V	A	E	E	A	P	G	A	Y	K	N	V	D	N	V	V	K	V	V	S	E	A	G	I	A	K	L	V	A	R	M	R	P	I	G	V	A	K	G
Template Known Secondary structure																						T	T						S								T		G	G	G	B														T	S	S
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.