Return to main results Retrieve Phyre Job Id

Job DescriptionP76298
Confidence21.36%DateThu Jan 5 12:21:40 GMT 2012
Rank19Aligned Residues47
% Identity17%Templated2fswa1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain HxlR-like
Resolution2.16

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   519520.........530.........540.........550. ........560.......
Predicted Secondary structure 







...................

Query SS confidence 
































. . . . . . . . . . . . . . . . . . .















Query Sequence  EMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI. . . . . . . . . . . . . . . . . . . RDMRTILETLAEHAPI
Query Conservation    
 

 

 
  
 
  
  


 

 
 


...................


  






    
Alig confidence 








.

.



















...................















Template Conservation 

 

   
.  .

   

 

  
   


 
      
  
 
 

  
  
 


  
  

  
Template Sequence  RYGELKRAI. PG. ISEKXLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDEIAKFGXE
Template Known Secondary structure  S.TT.

TTS
SSS

TT
Template Predicted Secondary structure 

.

.










Template SS confidence 



































































   37..40..... .. ..50.........60.........70.........80.........90.........100..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions