Job Description P76298 Confidence 41.50% Date Thu Jan 5 12:21:40 GMT 2012 Rank 8 Aligned Residues 131 % Identity 18% Template c3gz6A_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna Resolution 2.90 Å

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		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.				.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		R	S	I	R	K	K	F	A	Q	E	M	G	F	L	P	P	V	V	H	.	.	.	I	R	D	N	M	D	L	Q	P	A	R	Y	R	I	L	M	K	G	V	E	I	G	S	G	D	A	Y	P	G	R	W	L	A	I	N	P	G	T	A	A	G	T	L	P	G	E	A	T	V	D	P	A	F	G	L	N	A	I
Query Conservation																					.	.	.
Alig confidence																					.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	V	L	R	K	L	A	E	K	T	A	V	V	P	P	Y	I	E	Q	L	C	T	V	G	N	N	S	R	D	A	R	G	W	S	V	T	V	C	Y	T	A	L	M	S	Y	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	C	Q	I	Q	I	A	S	V	S	D	V	K
Template Known Secondary structure													S	S			S											S	S	S		T	T	S													S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S		S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.																					.	.	.	.	.	.	120	.	.	.	.	.	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	E	S	A	L	K	E	Q	A	Q	I	Q	G	Y	T	V	V	E	A	S	T	V	V	A	T	H	L	N	H	L	I	S	Q	H	A	A	E	L	F	G	R	Q	E	A	Q	Q	L	L	D	R	V	A	Q	E	M	P	K	L	T	E	D	L	V	P	G	V	V	T	L	T	T	L	H	K	V	L	Q	N	L
Query Conservation
Alig confidence															.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	W	P	L	A	D	V	L	Q	M	P	L	A	.	.	.	.	F	D	H	L	Q	L	I	E	Q	A	R	E	R	L	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	L	Y	S	L	V	P	G	F	A	L	S	E	P	F	T	L	P	E	L	Q	H	V	H	E	V	L
Template Known Secondary structure									T	T	S		B	S	.	.	.	.	T	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							G	G	G	G	G	S		S	S	B
Template Predicted Secondary structure															.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.																				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	E	K	V	P	I	R	D	M	R	T	I	L	E	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	K	P	I	Q	G	K	S	F	R	R	R	V	E	Q	A
Template Known Secondary structure		T	T	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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