Job Description Q46908 Confidence 81.37% Date Thu Jan 5 12:35:46 GMT 2012 Rank 22 Aligned Residues 146 % Identity 10% Template c2c4kD_ PDB info PDB header:regulatory protein Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase- PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39) Resolution 2.65 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.														.	.	70
Predicted Secondary structure																																																					.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	F	K	A	E	P	D	A	G	M	L	A	E	K	E	W	Q	A	A	A	Q	G	K	S	G	P	D	I	S	L	L	R	S	L	L	G	A	D	E	Q	A	A	A	A	L	L	L	A	Q	R	.	K	N	G	T	P	M	S	L	T	A	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	D
Query Conservation																																																					.													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.																																								.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.
Template Sequence		S	V	V	Y	Q	E	T	N	.	.	.	.	G	E	T	R	V	E	I	K	E	S	V	R	G	Q	D	I	F	I	I	Q	T	I	P	R	D	V	N	T	A	V	M	E	L	L	I	M	A	Y	A	L	K	T	A	C	A	R	N	I	I	G	V	I	P	Y	F	P	Y	S	K	Q	S	K	M	R	K	R	G	S
Template Known Secondary structure								T	T	.	.	.	.	S								S			T	T											S																			T	T		S							S	S		T	T	T	T	T	T	S			S	S	S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.																							.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.																							.	.	.	.
Query Sequence		E	R	A	L	H	W	L	R	Y	L	M	A	L	G	F	E	E	A	V	L	L	E	T	A	A	D	.	.	.	.	.	.	.	L	R	F	A	P	E	F	V	A	R	H	I	A	E	W	Q	H	Q	N	P	L	D	.	.	.	.	L	I	I	T	G	C	Q	S	S	E	G	Q	N	G	Q	T	P	F	L	L	A
Query Conservation																												.	.	.	.	.	.	.																							.	.	.	.
Alig confidence																												.	.	.	.	.	.	.																							.	.	.	.					.	.	.	.
Template Conservation																																																																	.	.	.	.
Template Sequence		I	V	C	K	L	L	A	S	M	L	A	K	A	G	L	T	H	I	I	T	M	D	L	H	Q	K	E	I	Q	G	F	F	S	F	P	V	D	N	L	R	A	S	P	F	L	L	Q	Y	I	Q	E	E	I	P	N	Y	R	N	A	V	I	V	A	.	.	.	.	K	S	P	D	A	A	K	R	A	Q	S	Y	A
Template Known Secondary structure														T									S		S	S	G	G	G	G	G	S		S	S																			S	T	T	G	G	G						.	.	.	.	S	S	G	G	G
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	L	G	W	P	C	F	T	Q	V	E	R	F	T	L	D	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	L	R	L	G	L	A	V	I	H	P	P	I	T	V	V	G	D
Template Known Secondary structure					T														S
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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