Job Description Q46908 Confidence 65.44% Date Thu Jan 5 12:35:46 GMT 2012 Rank 35 Aligned Residues 135 % Identity 12% Template c1u9yD_ PDB info PDB header:transferase Chain: D: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of phosphoribosyl diphosphate synthase2 from methanocaldococcus jannaschii Resolution 2.65 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.														.	.	.	70
Predicted Secondary structure																																																					.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	F	K	A	E	P	D	A	G	M	L	A	E	K	E	W	Q	A	A	A	Q	G	K	S	G	P	D	I	S	L	L	R	S	L	L	G	A	D	E	Q	A	A	A	A	L	L	L	A	Q	R	.	K	N	G	T	P	M	S	L	T	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	S	M	G	D
Query Conservation																																																					.												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.																		.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		V	E	Y	K	R	F	P	D	N	E	I	Y	V	R	I	V	D	E	I	N	D	D	E	A	V	I	I	N	T	.	.	.	.	.	Q	K	N	Q	N	D	A	I	V	E	T	I	L	L	C	D	A	L	R	D	E	G	V	K	K	I	T	L	V	A	P	Y	L	A	Y	A	R	Q	D	K	K	F	N	P	G	E
Template Known Secondary structure								T	T									S				S	S								.	.	.	.	.		S	S																	T	T	T									S	S		T	T		S		S	S		S	S	T	T
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.						.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.
Query Sequence		E	R	A	L	H	W	L	R	Y	L	M	A	L	G	F	E	E	A	V	L	L	E	T	A	A	D	.	.	.	.	.	.	.	L	R	F	A	P	E	F	V	A	R	H	I	A	E	W	Q	H	Q	N	P	L	D	L	I	I	T	G	C	Q	S	S	E	G	Q	N	G	Q	T	P	F	L	L	A	E	M	L	G
Query Conservation																												.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.																												.	.	.
Template Conservation																																																														.	.	.
Template Sequence		A	I	S	I	R	A	L	A	K	I	Y	S	N	I	V	D	K	L	I	T	I	N	P	H	E	T	H	I	K	D	F	F	T	I	P	F	I	Y	G	D	A	V	P	K	L	A	E	Y	V	K	D	K	L	N	D	P	I	V	L	A	.	.	.	P	D	K	G	A	L	E	F	A	K	T	A	S	K	I	L	N
Template Known Secondary structure																	S						S		S		G	G	G	G	G	G		S	S																T	T	T		S	S						.	.	.	S	S	G	G	G												T
Template Predicted Secondary structure																																																														.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		144	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	C	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	Y	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions