Job Description P77338 Confidence 24.20% Date Thu Jan 5 12:28:00 GMT 2012 Rank 228 Aligned Residues 44 % Identity 20% Template d1u7ka_ SCOP info Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Resolution 1.85

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Show / Hide Conservation and Alignment quality

		973	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	D	R	K	E	V	I	I	P	N	K	A	F	V	T	E	R	L	I	N	W	S	L	T	D	T	T	T	R	L	V	I	R	L	G	V	A	Y	G	S	D	L	E	K	V	R	K	V	L	L	K	A	A	T	E	H
Query Conservation
Alig confidence												.	.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.															.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	N	G	Q	L	Q	Y	W	P	.	.	.	F	S	S	S	D	L	Y	N	W	K	N	N	N	P	.	.	.	.	.	.	.	.	.	.	S	F	S	E	D	P	G	K	L	T	A	L	I	E	S	V	L	T	T	H
Template Known Secondary structure			T	T	S	S						.	.	.												T	S		.	.	.	.	.	.	.	.	.	.		T	T	T																T
Template Predicted Secondary structure												.	.	.															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.											.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions