Job Description P77338 Confidence 96.10% Date Thu Jan 5 12:28:00 GMT 2012 Rank 31 Aligned Residues 379 % Identity 11% Template c3r6nA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:desmoplakin; PDBTitle: crystal structure of a rigid four spectrin repeat fragment of the2 human desmoplakin plakin domain Resolution 2.95 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		D	R	I	K	E	E	T	V	Q	L	R	Q	K	V	A	E	A	P	E	K	M	R	Q	A	.	.	.	.	.	T	A	A	L	T	A	L	S	D	V	D	N	D	E	E	T	R	K	I	L	S	T	L	S	L	R	Q	L	E	T	R	V	A	Q	A	L	D	D	L	Q	N	A	Q	N	D	L	A	S	Y	N	S
Query Conservation																										.	.	.	.	.
Alig confidence																										.	.	.	.	.																																					.
Template Conservation																																																																			.
Template Sequence		E	F	T	K	H	V	T	S	E	C	L	G	W	M	R	Q	Q	R	A	E	M	D	M	V	A	W	G	V	D	L	A	S	V	E	Q	H	I	N	S	H	R	G	I	H	N	S	I	G	D	Y	R	W	Q	L	D	K	I	K	A	D	L	R	E	K	S	.	A	I	Y	Q	L	E	E	E	Y	E	N	L	L	K
Template Known Secondary structure																						T	T	S																																											.
Template Predicted Secondary structure																																																																			.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	V	S	L	Q	T	Q	P	E	R	V	Q	N	A	M	Y	N	A	S	Q	Q	L	Q	Q	I	R	S	R	L	D	G	T	D	V	G	E	T	A	L	R	P	S	Q	K	V	L	M	Q	A	Q	Q	A	L	L	N	A	E	I	D	Q	Q	R	K	S	L	E	G	N	T	V	L	Q	D	T	L	Q	K	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	F	E	R	M	D	H	L	R	Q	L	Q	N	I	I	Q	A	T	S	R	E	I	M	W	I	N	D	C	E	E	E	E	L	L	Y	D	W	S	D	K	N	T	N	I	A	Q	K	Q	E	A	F	S	I	R	M	S	Q	L	E	V	K	E	K	E	L	N	K	L	K	Q	E	S	D	Q	L	V	L	N	Q
Template Known Secondary structure																																				S				S	T	T				T	T																																	T	T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	V	T	A	N	S	A	R	L	E	H	Q	L	Q	L	L	Q	E	A	V	N	S	K	R	L	T	L	T	E	K	T	A	Q	E	A	V	S	P	D	E	A	A	R	I	Q	A	N	P	L	V	K	Q	E	L	E	I	N	Q	Q	L	S	Q	R	L	I	T	A	T	E	N	G	N	Q	L	M	Q	Q	N	I
Query Conservation
Alig confidence																											.	.	.	.	.
Template Conservation																											.	.	.	.	.
Template Sequence		H	P	A	S	D	K	I	E	A	Y	M	D	T	L	Q	T	Q	W	S	W	I	L	Q	I	T	.	.	.	.	.	K	C	I	D	V	H	L	K	E	N	A	A	Y	F	Q	F	F	E	E	A	Q	S	T	E	A	Y	L	K	G	L	Q	D	S	I	R	K	K	Y	P	C	D	K	N	M	P	L	Q	H	L	L
Template Known Secondary structure			T	T																							.	.	.	.	.																																						S				T	T
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.						.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	K	N	W	L	E	R	A	L	Q	S	E	R	N	I	K	E	Q	I	A	V	L	K	G	S	L	L	L	S	R	I	L	Y	Q	Q	Q	Q	T	L	P	S	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Q	I	K	E	L	E	K	E	R	E	K	I	L	E	Y	K	R	Q	V	Q	N	L	V	N	K	S	K	K	I	V	Q	L	K	P	R	N	P	D	Y	R	S	N	K	P	I	I	L	R	A	L	C	D	Y	K	Q	D	Q	K	I	V	H	K	G	D	E	C	I	L	K	D	N	N	E	R	S	K	W	Y	V
Template Known Secondary structure																													T	T					G	G	G	S	T	T				S	S							S	S					T	T					T	T									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
																												361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	E	N	M	T	N	R	I	A	D	L	R	L	E	Q	F	E	V	N	Q	Q	R	D	A	L	F	Q	S	D	A	F	V	N	K	L	E	E	G	H	T	N	E	V	N	S	E	V	H	D	A	L	L	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	P	G	G	V	D	M	L	V	P	S	V	G	L	I	I	P	P	P	N	P	L	A	V	D	L	S	C	K	I	E	Q	Y	Y	E	A	I	L	A	L	W	N	Q	L	Y	I	N	M	K	S	L	V	S	W	H	Y	C	M	I	D	I	E	K	I	R	A	M	T	I	A	K	L	K	T	M	R	Q	E	D
Template Known Secondary structure				S	S	S							G	G	G					S																																																T							T	T	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	D	M	R	R	E	L	L	D	Q	L	N	K	Q	L	G	N	Q	L	M	M	A	I	N	L	Q	I	N	Q	Q	Q	L	M	S	V	S	K	N	L	K	S	I	L	T	Q	Q	I	F	W	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	M	K	T	I	A	D	L	E	L	H	Y	Q	E	F	I	R	N	S	Q	G	S	E	M	F	G	D	D	D	K	R	K	I	Q	S	Q	F	T	D	A	Q	K	H	Y	Q	T	L	V	I	Q	L	P
Template Known Secondary structure																					T	T		S	S																										S
Template Predicted Secondary structure
Template SS confidence
		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.