Job Description P77338 Confidence 77.78% Date Thu Jan 5 12:28:00 GMT 2012 Rank 63 Aligned Residues 166 % Identity 10% Template c2xgjA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance Resolution 2.90 Å

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	D	N	D	E	E	T	R	K	I	L	S	T	L	S	L	R	Q	L	E	T	R	V	A	Q	A	L	D	D	L	Q	N	A	Q	N	D	L	A	S	Y	N	S	Q	L	V	S	L	Q	T	Q	P	E	R	V	Q	N	A	M	Y	N	A	S	Q	Q	L	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	F	M	L	E	H	S	F	F	Q	F	Q	N	V	I	S	V	P	V	M	E	K	K	L	A	E	L	K	K	D	F	D	G	I	E	V	E	D	E	E	N	V	K	E	Y	H	E	I	E	Q	A	I	K	G	Y	R	E	D	V	R	Q	V	V	T	H	P	A	N	A	L	S	F	L	Q	P	G	R	L	V	E
Template Known Secondary structure																										.								S	S				S		T																								T	S					G	G	G			T	T
Template Predicted Secondary structure
Template SS confidence
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	V	N	G	K	D	N	Y	G	W	G	A	V	V	D	F	A	K	R	I	N	K	R	N	P	S	A	V	Y	T	D	H	E	S	Y	I	V	N	V	V	V	N	T	M	Y	I	D	S	P	V	N	L	L	K	P	F	N	P	T	L	P	E	G	I	R	P	A	E	E	G	E	K	S	I	C	A	V	I	P
Template Known Secondary structure					T	T	T																	S	S		T	T					T	T	T	T												T	T	S		G	G	G			T	T						T	T			B			T	T
Template Predicted Secondary structure
Template SS confidence
		682	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.
																														182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	S	R	L	D	G	T	D	V	G	E	T	A	L	R	P	.	.	.	.	.	S	Q	K	V	L	M	Q	A	Q	Q	A	L	L	N	A	E	I	D	Q	Q	R	K	S	L	E	G	N	T	V	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation
Template Sequence		I	T	L	D	S	I	K	S	I	G	N	L	R	L	Y	M	P	K	D	I	R	A	S	G	Q	K	E	T	V	G	K	S	L	R	E	V	N	R	R	F	P	D	G	I	P	V	L	D	P	V	K	N	M	K	I	E	D	E	D	F	L	K	L	M	K	K	I	D	V	L	N	T	K	L	S	S	N	P	L	T
Template Known Secondary structure				G	G	G													S	S	T	T		S	S	S															S	S	S				B			T	T	T	T	S																						T	T	S
Template Predicted Secondary structure
Template SS confidence
		762	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	T	L	Q	K	Q	R	D	Y	V	T	A	N	S	A	R	L	E	H	Q	L	Q	L	L	Q	E	A	V	N	S	K	R	L	T	L	T	E	K	T	A	Q	E	A	V	S	P	D	E	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	M	R	L	E	E	L	Y	G	K	Y	S	R	K	H	D	L	H	E	D	M	K	Q	L	K	R	K	I	S	E	S	Q	A	V	I	Q	L	D	D	L	R	R	R	K	R	V	L	R	R	L
Template Known Secondary structure			S	S	S												.																T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		842	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions