Job Description P77338 Confidence 100.00% Date Thu Jan 5 12:28:00 GMT 2012 Rank 1 Aligned Residues 253 % Identity 22% Template c2vv5D_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs Resolution 3.45 Å

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		843	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	S	L	L	F	A	I	I	A	S	M	V	A	W	A	L	I	R	N	L	P	G	L	L	E	V	L	V	L	S	R	L	N	M	R	Q	G	A	S	Y	A	I	T	T	I	L	N	Y	I	I	I	A	V	G	A	M	T	V	F	G	S	L	G	V	S	W	D	K	L	Q	W	L	A	A	A	L	S	V	G
Query Conservation
Alig confidence																											.
Template Conservation																											.
Template Sequence		A	V	N	I	V	A	A	L	A	I	I	I	V	G	L	I	I	A	R	M	I	S	N	A	V	.	N	R	L	M	I	S	R	K	I	D	A	T	V	A	D	F	L	S	A	L	V	R	Y	G	I	I	A	F	T	L	I	A	A	L	G	R	V	G	V	Q	T	A	S	V	I	A	V	L	G	A	A	G	L	V
Template Known Secondary structure		G	S																								.									S																											T	T	T			S	T	T
Template Predicted Secondary structure																											.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		923	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	F	G	L	Q	E	I	F	G	N	F	V	S	G	L	I	I	L	F	E	R	P	V	R	I	G	D	T	V	T	I	G	S	F	S	G	T	V	S	K	I	R	I	R	A	T	T	I	T	D	F	D	R	K	E	V	I	I	P	N	K	A	F	V	T	E	R	L	I	N	W	S	L	T	D	T	T	T	R
Query Conservation
Alig confidence																																																																														.
Template Conservation																																																																														.
Template Sequence		V	G	L	A	L	Q	G	S	L	S	N	L	A	A	G	V	L	L	V	M	F	R	P	F	R	A	G	E	Y	V	D	L	G	G	V	A	G	T	V	L	S	V	Q	I	F	S	T	T	M	R	T	A	D	G	K	I	I	V	I	P	N	G	K	I	I	A	G	N	I	I	N	F	S	R	E	P	.	V	R	R
Template Known Secondary structure							T														T	T		S	S		T	T					S	S	S										S	S							T	T	S												T	S					S	S	S	S	S	.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.
		1003	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	I	R	L	G	V	A	Y	G	S	D	L	E	K	V	R	K	V	L	L	K	A	A	T	E	H	P	R	V	M	H	E	P	M	P	E	V	F	F	T	A	F	G	A	S	T	L	D	H	E	L	R	L	Y	V	R	E	L	R	D	R	S	R	T	V	D	E	L	N	R	T	I	D	Q	L	C	R	E	N
Query Conservation
Alig confidence																																																										.
Template Conservation																																																										.
Template Sequence		N	E	F	I	I	G	V	A	Y	D	S	D	I	D	Q	V	K	Q	I	L	T	N	I	I	Q	S	E	D	R	I	L	K	D	R	E	M	T	V	R	L	N	E	L	G	A	S	S	I	N	F	V	V	R	V	W	S	.	N	S	G	D	L	Q	N	V	Y	W	D	V	L	E	R	I	K	R	E	F	D	A	A
Template Known Secondary structure										T	T	S																	T	T	B		T	T	S											S	S	S										.		T	T	T
Template Predicted Secondary structure																																																										.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		1083	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	N	I	A	F	N	Q	L	E	V	H	L	H	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	S	F	P	Y	P	Q	M	D	V	N	F	K	R	V
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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