Job Description P77338 Confidence 96.50% Date Thu Jan 5 12:28:00 GMT 2012 Rank 27 Aligned Residues 282 % Identity 9% Template c2oexB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: structure of alix/aip1 v domain Resolution 2.58 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.
Query Sequence		L	V	Q	Q	D	L	T	D	T	L	A	T	L	D	K	I	D	R	I	K	E	E	T	V	Q	L	R	Q	K	V	A	E	A	P	E	K	M	R	Q	A	T	A	A	L	T	A	L	S	D	V	D	N	D	E	E	T	R	K	I	L	S	.	.	.	.	.	.	T	L	S	L	R	Q	L	E	T	R	V	A	Q
Query Conservation																																																															.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.
Template Conservation
Template Sequence		Q	S	I	L	T	K	S	R	S	V	I	E	Q	G	G	I	Q	T	V	D	Q	L	I	K	E	L	P	E	L	L	Q	R	N	R	E	I	L	D	E	S	L	R	L	L	D	E	E	E	A	T	D	N	D	L	R	A	K	F	K	E	R	W	Q	R	T	P	S	N	E	L	Y	K	P	L	R	A	E	G	T	N
Template Known Secondary structure														T	T	T																																											S	S	T	T			S							T
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	D	D	L	Q	N	A	Q	N	D	L	A	S	Y	N	S	Q	L	V	S	L	Q	T	Q	P	E	R	V	Q	N	A	M	Y	N	A	S	Q	Q	L	Q	Q	I	R	S	R	L	D	G	T	D	V	G	E	T	A	L	R	P	S	Q	K	V	L	M	Q	A	Q	Q	A	L	L	N	A	E	I	D	Q	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	T	V	L	D	K	A	V	Q	A	D	G	Q	V	K	E	C	Y	Q	S	H	R	D	T	I	V	L	L	C	K	P	E	P	E	L	N	A	A	I	P	S	A	N	P	A	K	T	X	Q	G	S	E	V	V	N	V	L	K	S	L	L	S	N	L	D	E	V	K	K	E	R	E	G	L	E	N	D	L	K
Template Known Secondary structure																						T	T								T	S							T	T	S							T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	L	E	G	N	T	V	L	Q	D	T	L	Q	K	Q	R	D	Y	V	T	A	N	S	A	R	L	E	H	Q	L	Q	L	L	Q	E	A	V	N	S	K	R	L	T	L	T	E	K	T	A	Q	E	A	V	S	P	D	E	A	A	R	I	Q	A	N	P	L	V	K	Q	E	L	E	I	N	Q	Q	L	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	N	F	D	X	T	S	K	F	L	T	A	L	A	Q	D	G	V	I	N	E	E	A	L	S	V	T	E	L	D	R	V	Y	G	G	L	T	T	K	V	Q	E	S	L	K	K	Q	E	G	L	L	K	N	I	Q	V	S	H	Q	E	F	S	K	X	K	Q	S	N	N	E	A	N	L	R	E	E	V	L	K
Template Known Secondary structure		T																S	S	S															T																													T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	I	T	A	T	E	N	G	N	Q	L	M	Q	Q	N	I	K	V	K	N	W	L	E	R	A	L	Q	S	E	R	N	I	K	E	Q	I	A	V	L	K	G	S	L	L	L	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	A	T	A	Y	D	N	F	V	E	L	V	A	N	L	K	E	G	T	K	F	Y	N	E	L	T	E	I	L	V	R	F	Q	N	K	C	S	D	I	V	F	A	R	K	T	E	R
Template Known Secondary structure																																																T
Template Predicted Secondary structure
Template SS confidence
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions