Job Description P77338 Confidence 30.23% Date Thu Jan 5 12:28:00 GMT 2012 Rank 181 Aligned Residues 166 % Identity 8% Template c2iakA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:bullous pemphigoid antigen 1, isoform 5; PDBTitle: crystal structure of a protease resistant fragment of the plakin2 domain of bullous pemphigoid antigen1 (bpag1) Resolution 3.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		V	L	L	C	Q	N	T	A	F	A	R	A	S	S	N	G	D	L	P	T	K	A	D	L	Q	A	Q	L	D	S	L	N	K	Q	K	D	L	S	A	Q	D	K	L	V	Q	Q	D	L	T	D	T	L	A	T	L	.	.	D	K	I	D	R	I	K	E	E	T	V	Q	L	R	Q	K	V	A	E	A	P	E	K
Query Conservation																																																									.	.
Alig confidence																																																									.	.
Template Conservation
Template Sequence		L	L	N	W	V	D	E	M	Q	V	Q	L	D	R	T	E	W	G	S	D	L	P	S	V	E	S	H	L	E	N	H	K	N	V	H	R	A	I	E	E	F	E	S	S	L	K	E	A	K	I	S	E	I	Q	M	T	A	P	L	K	L	S	Y	T	D	K	L	H	R	L	E	S	Q	Y	A	K	L	L	N	T
Template Known Secondary structure															T					S	S																					T											G	G	G			T	T																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	Q	A	T	A	A	L	T	A	L	S	D	V	D	N	D	E	E	T	R	K	I	L	S	T	L	S	L	R	Q	L	E	T	R	V	A	Q	A	L	D	D	L	Q	N	A	Q	N	D	L	A	S	Y	N	S	Q	L	V	S	L	Q	T	Q	P	E	R	V	Q	N	A	M	Y	N	A	S	Q	Q	L	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	N	Q	E	R	H	L	D	T	L	H	N	F	V	T	R	A	T	N	E	L	I	W	L	N	E	K	E	E	S	E	V	A	Y	H	A	E	L	M	R	E	L	E	Q	K	E	E	S	I	K	A	V	Q	E	I	A	E	Q	L	L	L	E	N	H	P	A	R	L	T	I	E	A	Y	R	A	A	M	Q	T
Template Known Secondary structure																																						S	S																									T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		182	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	S	R	L	D	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	W	S	W	I	L	Q	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions